View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19718_low_20 (Length: 292)

Name: NF19718_low_20
Description: NF19718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19718_low_20
NF19718_low_20
[»] chr5 (9 HSPs)
chr5 (17-285)||(17383551-17383819)
chr5 (21-269)||(17377184-17377438)
chr5 (216-283)||(17392453-17392520)
chr5 (126-252)||(19806841-19806967)
chr5 (171-252)||(20111938-20112019)
chr5 (172-252)||(19653900-19653980)
chr5 (190-252)||(13712176-13712238)
chr5 (192-252)||(1347935-1347995)
chr5 (21-57)||(17392345-17392381)
[»] chr1 (1 HSPs)
chr1 (41-266)||(26052955-26053180)
[»] scaffold0009 (2 HSPs)
scaffold0009 (190-254)||(40602-40666)
scaffold0009 (198-254)||(33992-34048)
[»] chr2 (1 HSPs)
chr2 (190-233)||(15784656-15784699)
[»] chr3 (4 HSPs)
chr3 (190-252)||(24912861-24912923)
chr3 (171-252)||(24890924-24891005)
chr3 (190-251)||(32226559-32226620)
chr3 (171-251)||(32242030-32242110)


Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 17383551 - 17383819
Alignment:
Q  17 tgattatctgtatttataaaatgtatgtattttcttttttgtcttgtgcctgtgcagatagcacgaagtctttccaataaacaaatcaatacatttgaga 116  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| || || ||||||||||||||||||||||||||||||||    
T  17383551 tgattatctgtatttataagatgtatgtattttcttttttgtgttgtgcctgtgcagatagaacaaaatctttccaataaacaaatcaatacatttgaga 17383650  T
Q  117 aaagccttcccgtgcttgaaaacttaagggaacttcaactaacttggttcgaacgcattcataactgggaggtggtagtgaaaatgctacagaattgtcc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17383651 aaagccttcccgtgcttgaaaacttaagggaacttcaactaacttggttcggacgcattcataactgggaggtggtagtgaaaatgctacagaattgtcc 17383750  T
Q  217 caaacttcaaactcttaccattctaaaggtttgtttattatagttactaatttttacaggttcttctct 285  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17383751 catacttcaaactcttaccattctaaaggtttgtttattatagttactaatttttacaggttcttctct 17383819  T

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Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 269
Target Start/End: Original strand, 17377184 - 17377438
Alignment:
Q  21 tatctgtatttataaaatgtatgtattttcttttttgtcttgtgcctgtgcagatagcacgaagtctttccaataaacaaatcaatacatttgagaaaag 120  Q
    ||||||||| ||||| |||||||||||||||||||||| ||||| |||||||||||| ||||||||||||| ||||| |||||||| ||||||| |||||    
T  17377184 tatctgtatgtataagatgtatgtattttcttttttgtgttgtgtctgtgcagatagaacgaagtctttccgataaagaaatcaattcatttgacaaaag 17377283  T
Q  121 ccttcccgtgcttgaaaacttaagggaacttcaactaacttggt-tcgaac-----gcattcataactgggaggtggtagtgaaaatgctacagaattgt 214  Q
    ||||||| || |||||||| |||    |||||||||| |||||| || ||      || ||||| |||||||||||||| ||||||||||||||||||||    
T  17377284 ccttcccatgtttgaaaacataaccagacttcaactatcttggtctccaagcattagcgttcatgactgggaggtggtattgaaaatgctacagaattgt 17377383  T
Q  215 cccaaacttcaaactcttaccattctaaaggtttgtttattatagttactaattt 269  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17377384 cccaaacttcaaactcttaccattgtaaaggtttgtttattatagttactaattt 17377438  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 17392453 - 17392520
Alignment:
Q  216 ccaaacttcaaactcttaccattctaaaggtttgtttattatagttactaatttttacaggttcttct 283  Q
    |||||||||||||||||| ||||  ||||||||||| |||||||||||||||||||||  ||||||||    
T  17392453 ccaaacttcaaactcttaacattgcaaaggtttgttcattatagttactaatttttaccagttcttct 17392520  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 252
Target Start/End: Original strand, 19806841 - 19806967
Alignment:
Q  126 ccgtgcttgaaaacttaagggaacttcaactaacttggttcgaacgcattcataactgggaggtggtagtgaaaatgctacagaattgtcccaaacttca 225  Q
    ||||| ||||||||||||  || ||||||||| |||||| | |  ||  |||| | ||||| | ||||||||||||||| || |||||||||||||| ||    
T  19806841 ccgtgtttgaaaacttaactgaccttcaactatcttggtgcaatggcgctcatgattgggatgaggtagtgaaaatgctccaaaattgtcccaaactcca 19806940  T
Q  226 aactcttaccattctaaaggtttgttt 252  Q
    ||||||| | |||  ||||||||||||    
T  19806941 aactcttgcaattaaaaaggtttgttt 19806967  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 20111938 - 20112019
Alignment:
Q  171 gcattcataactgggaggtggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattctaaaggtttgttt 252  Q
    |||||||| ||||||  | ||||||||||||||| ||||| ||||||||||||||| | ||||  ||| |||||||||||||    
T  20111938 gcattcatgactggggtgaggtagtgaaaatgctccagaaatgtcccaaacttcaagcacttaaaattgtaaaggtttgttt 20112019  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 19653980 - 19653900
Alignment:
Q  172 cattcataactgggaggtggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattctaaaggtttgttt 252  Q
    ||||||||||||||| | |||  |||||||||||||  ||||||||||||||||| ||||||  |||  ||||||||||||    
T  19653980 cattcataactgggaagaggttatgaaaatgctacaatattgtcccaaacttcaagctcttaaaattaaaaaggtttgttt 19653900  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 252
Target Start/End: Complemental strand, 13712238 - 13712176
Alignment:
Q  190 ggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattctaaaggtttgttt 252  Q
    |||||||||||||||||| |  |||||||||||||||||||||   ||| |||||||||||||    
T  13712238 ggtagtgaaaatgctacaaagctgtcccaaacttcaaactcttcgaattgtaaaggtttgttt 13712176  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 252
Target Start/End: Complemental strand, 1347995 - 1347935
Alignment:
Q  192 tagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattctaaaggtttgttt 252  Q
    |||||||||||||  |||||||||| ||||||||||||||  |||||  ||||||||||||    
T  1347995 tagtgaaaatgctcgagaattgtcctaaacttcaaactctctccatttcaaaggtttgttt 1347935  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 17392345 - 17392381
Alignment:
Q  21 tatctgtatttataaaatgtatgtattttcttttttg 57  Q
    ||||||||||||||| |||||||||||||||||||||    
T  17392345 tatctgtatttataagatgtatgtattttcttttttg 17392381  T

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Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 41 - 266
Target Start/End: Complemental strand, 26053180 - 26052955
Alignment:
Q  41 atgtattttcttttttgtcttgtgcctgtgcagatagcacgaagtctttccaataaacaaatcaatacatttgagaaaagccttcccgtgcttgaaaact 140  Q
    ||||||||||||||||||  |||| || ||||||| |  | |||||||||||||||| |||||||| ||||||| |||||||||||| || |||||||||    
T  26053180 atgtattttcttttttgtgatgtggctatgcagattgggcaaagtctttccaataaagaaatcaattcatttgacaaaagccttcccatgtttgaaaact 26053081  T
Q  141 taagggaacttcaactaacttggttcgaacgcattcataactgggaggtggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattct 240  Q
    |||  |||||| |||||  |||||   || |||||||| |||||||||| || ||||||||||||||||||||||||||||||||  |||||  ||||      
T  26053080 taaccgaacttgaactattttggtctcaaggcattcatgactgggaggtagtggtgaaaatgctacagaattgtcccaaacttcactctctttacattgc 26052981  T
Q  241 aaaggtttgtttattatagttactaa 266  Q
    ||||||||||||| ||||||||||||    
T  26052980 aaaggtttgtttaatatagttactaa 26052955  T

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Target: scaffold0009 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 40602 - 40666
Alignment:
Q  190 ggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattctaaaggtttgtttat 254  Q
    |||| |||||||||| ||||||||||| ||||||||||||||| | |||  ||||||||||||||    
T  40602 ggtaatgaaaatgctccagaattgtccgaaacttcaaactctttcgattaaaaaggtttgtttat 40666  T

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Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 33992 - 34048
Alignment:
Q  198 aaatgctacagaattgtcccaaacttcaaactcttaccattctaaaggtttgtttat 254  Q
    ||||||| ||| ||||||| ||||||||||||||| | |||  ||||||||||||||    
T  33992 aaatgctccagcattgtccgaaacttcaaactctttcgattaaaaaggtttgtttat 34048  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 233
Target Start/End: Original strand, 15784656 - 15784699
Alignment:
Q  190 ggtagtgaaaatgctacagaattgtcccaaacttcaaactctta 233  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||    
T  15784656 ggtagtgaaaatgctacagaattgtccaaaacttcaagctctta 15784699  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 252
Target Start/End: Original strand, 24912861 - 24912923
Alignment:
Q  190 ggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattctaaaggtttgttt 252  Q
    |||||||||||||||  || |||||||||||||||||||||| |  |||| ||||||||||||    
T  24912861 ggtagtgaaaatgctttaggattgtcccaaacttcaaactctaaaaattcaaaaggtttgttt 24912923  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 24890924 - 24891005
Alignment:
Q  171 gcattcataactgggaggtggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattctaaaggtttgttt 252  Q
    |||||||| | ||||| | || ||||||||||||  || |||||||||||||||||| ||| |  |||| ||||||||||||    
T  24890924 gcattcatgattgggacgaggcagtgaaaatgctttaggattgtcccaaacttcaaattctaaaaattcaaaaggtttgttt 24891005  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 32226559 - 32226620
Alignment:
Q  190 ggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattctaaaggtttgtt 251  Q
    ||||||| ||||||| ||  ||||||||||||||||||||||| | |||  |||||||||||    
T  32226559 ggtagtgcaaatgctccattattgtcccaaacttcaaactcttccaatttcaaaggtttgtt 32226620  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 32242110 - 32242030
Alignment:
Q  171 gcattcataactgggaggtggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattctaaaggtttgtt 251  Q
    |||||||||| ||| | | |||| || ||||||| ||  |||||||||| |||||||||||| | ||| ||||||||||||    
T  32242110 gcattcataattggtatgaggtactgcaaatgctccattattgtcccaaccttcaaactctttcaattttaaaggtttgtt 32242030  T

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