View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19718_low_25 (Length: 250)

Name: NF19718_low_25
Description: NF19718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19718_low_25
NF19718_low_25
[»] chr1 (12 HSPs)
chr1 (9-250)||(6768911-6769170)
chr1 (27-173)||(30210164-30210310)
chr1 (60-177)||(32712044-32712162)
chr1 (106-174)||(44108963-44109031)
chr1 (64-175)||(4075640-4075752)
chr1 (60-175)||(50004184-50004299)
chr1 (60-147)||(42471274-42471362)
chr1 (104-173)||(19806187-19806256)
chr1 (107-178)||(9381880-9381951)
chr1 (60-102)||(4952118-4952160)
chr1 (60-175)||(30952148-30952263)
chr1 (113-175)||(49288373-49288435)
[»] chr4 (5 HSPs)
chr4 (11-173)||(45413042-45413204)
chr4 (9-147)||(2183946-2184084)
chr4 (60-182)||(35075167-35075289)
chr4 (60-175)||(34667134-34667250)
chr4 (83-178)||(44128538-44128634)
[»] chr2 (10 HSPs)
chr2 (9-175)||(6458236-6458402)
chr2 (62-181)||(40053769-40053888)
chr2 (60-176)||(36242529-36242650)
chr2 (59-175)||(12027367-12027483)
chr2 (104-172)||(1529355-1529423)
chr2 (60-174)||(7671148-7671263)
chr2 (60-98)||(18666071-18666109)
chr2 (60-174)||(1345327-1345441)
chr2 (60-98)||(16567069-16567107)
chr2 (60-144)||(40627037-40627122)
[»] chr8 (9 HSPs)
chr8 (19-173)||(31734980-31735135)
chr8 (73-145)||(12595444-12595516)
chr8 (60-145)||(32897651-32897737)
chr8 (104-147)||(26544410-26544453)
chr8 (80-178)||(38503614-38503713)
chr8 (73-175)||(22573753-22573855)
chr8 (60-122)||(42180627-42180689)
chr8 (61-98)||(7548773-7548810)
chr8 (60-160)||(23586059-23586159)
[»] chr5 (9 HSPs)
chr5 (61-167)||(7010076-7010182)
chr5 (60-181)||(13416280-13416402)
chr5 (54-186)||(16290308-16290441)
chr5 (61-140)||(39466643-39466723)
chr5 (60-98)||(13040372-13040410)
chr5 (60-98)||(13110365-13110403)
chr5 (60-136)||(26449110-26449187)
chr5 (60-175)||(32528946-32529062)
chr5 (105-145)||(40778548-40778588)
[»] scaffold1822 (1 HSPs)
scaffold1822 (61-175)||(502-616)
[»] chr3 (2 HSPs)
chr3 (60-145)||(40417660-40417745)
chr3 (60-124)||(48935744-48935809)
[»] chr6 (3 HSPs)
chr6 (105-176)||(6149155-6149226)
chr6 (93-176)||(14439780-14439863)
chr6 (98-147)||(17991061-17991110)
[»] scaffold1793 (1 HSPs)
scaffold1793 (94-175)||(1-82)
[»] chr7 (3 HSPs)
chr7 (59-175)||(29127449-29127566)
chr7 (59-145)||(37970486-37970573)
chr7 (60-139)||(39595439-39595518)


Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 6768911 - 6769170
Alignment:
Q  9 agcaaaggtgtaccaaacacatgaaaaaataaaattatattttcctattgtttatcatgtgtgcaccaaacatgtgataggataaatgttatcaggtcac 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  6768911 agcaaaggtgtaccaaacacatgaaaaaataaaattatattttcctattgtttatcatgtgtgcaccaaacatgtgataggataaacgttatcaagtcac 6769010  T
Q  109 tatcatatcatatccttatccatcttcttatcctatcatttg--------------------tttatcttatcatgtgcaccaaacgagctctatatatt 188  Q
    |||||||||||||| |||||||||||||||||||||||||||                    |||||| |||||| ||||||||||||||||||||||      
T  6769011 tatcatatcatatctttatccatcttcttatcctatcatttgtttgtttatcctatcatttatttatcatatcatatgcaccaaacgagctctatata-- 6769108  T
Q  189 ttatgttattttacttctatagcatttcttcattgctttagattccacgggcgtcttgtgcc 250  Q
      | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6769109 aaacgctattttacttctatagcatttcttcattgctttagattccacgggcgtcttgtgcc 6769170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 173
Target Start/End: Original strand, 30210164 - 30210310
Alignment:
Q  27 acatgaaaaaataaaattatattttcctattgtttatcatgtgtgcaccaaacatgtgataggataaatgttatcaggtcactatcatatcatatcctta 126  Q
    ||||||||  ||||||| ||||| || | ||  |||||||||||| | |||||| ||||||||||||||||||||| |||| |||||||||||||| |||    
T  30210164 acatgaaaggataaaataatattatcatgtttcttatcatgtgtgtatcaaacaagtgataggataaatgttatcatgtcattatcatatcatatcttta 30210263  T
Q  127 tccatcttcttatcctatcatttgtttatcttatcatgtgcaccaaa 173  Q
    |||||||  |||||||||||| | |||||| ||||||||||||||||    
T  30210264 tccatctctttatcctatcatgtctttatcctatcatgtgcaccaaa 30210310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 177
Target Start/End: Complemental strand, 32712162 - 32712044
Alignment:
Q  60 ttatcatgtgtgcaccaaacatgtgataggataaatgt-tatcaggtcactatcatatcatatccttatccatcttcttatcctatcatttgtttatctt 158  Q
    ||||||||||||||||||||   |||||| |||| | | ||||| || ||||||||||||||| |||||||| || |||||| |||||| ||| |||| |    
T  32712162 ttatcatgtgtgcaccaaacgcatgatagcataagtatctatcatgttactatcatatcatattcttatccaactccttatcatatcatgtgtctatcct 32712063  T
Q  159 atcatgtgcaccaaacgag 177  Q
    |||||||||||||||||||    
T  32712062 atcatgtgcaccaaacgag 32712044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 44108963 - 44109031
Alignment:
Q  106 cactatcatatcatatccttatccatcttcttatcctatcatttgtttatcttatcatgtgcaccaaac 174  Q
    ||||||||||||||||||||||||| ||||||||| |||||| ||||||||  ||||||||||||||||    
T  44108963 cactatcatatcatatccttatccaacttcttatcatatcatgtgtttatccaatcatgtgcaccaaac 44109031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 4075752 - 4075640
Alignment:
Q  64 catgtgtgcaccaaacatgtgataggataaatgt-tatcaggtcactatcatatcatatccttatccatcttcttatcctatcatttgtttatcttatca 162  Q
    |||||||| ||||||||  ||||||||||| ||| ||||  |||||||||||||| ||||||| ||||||||||||||||||| |   | |||| |||||    
T  4075752 catgtgtgaaccaaacacatgataggataagtgtctatcttgtcactatcatatcctatccttgtccatcttcttatcctatcttgactctatcctatca 4075653  T
Q  163 tgtgcaccaaacg 175  Q
    || ||||||||||    
T  4075652 tgcgcaccaaacg 4075640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 175
Target Start/End: Complemental strand, 50004299 - 50004184
Alignment:
Q  60 ttatcatgtgtgcaccaaacatgtgataggataaatgttatcaggtcactatcatatcatatccttatccatcttcttatcctatcatttgtttatctta 159  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||   |||| | || ||||||| ||||  ||| ||||||||| | | | |||| ||    
T  50004299 ttatcatgtgtgcaccaaacatatgataggataaatgttatcatgtttatatcttttcctatccttctccaatttcatatcctatcgtatctctatcata 50004200  T
Q  160 tcatgtgcaccaaacg 175  Q
    | ||||||||||||||    
T  50004199 tgatgtgcaccaaacg 50004184  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 147
Target Start/End: Complemental strand, 42471362 - 42471274
Alignment:
Q  60 ttatcatgtgtgcaccaaacatgtgataggataaatgt-tatcaggtcactatcatatcatatccttatccatcttcttatcctatcat 147  Q
    |||||||||||||||||||||  ||||| ||||||||| |||||  ||| |||||||||||||| ||||| || |||| ||||||||||    
T  42471362 ttatcatgtgtgcaccaaacacatgatatgataaatgtctatcatatcattatcatatcatatctttatctattttctaatcctatcat 42471274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 19806256 - 19806187
Alignment:
Q  104 gtcactatcatatcatatccttatccatcttcttatcctatcatttgtttatcttatcatgtgcaccaaa 173  Q
    |||||||||||||| |||||||||||| |||||||||||||| | | | |||| |||| |||||||||||    
T  19806256 gtcactatcatatcctatccttatccagcttcttatcctatcttgtctctatcctatcctgtgcaccaaa 19806187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 9381951 - 9381880
Alignment:
Q  107 actatcatatcatatccttatccatcttcttatcctatcatttgtttatcttatcatgtgcaccaaacgagc 178  Q
    |||||||||||||||||||||||||||||| ||||| |||  | | |||| ||||||| |||||||| ||||    
T  9381951 actatcatatcatatccttatccatcttctaatcctctcaggtctctatcctatcatgcgcaccaaatgagc 9381880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 4952118 - 4952160
Alignment:
Q  60 ttatcatgtgtgcaccaaacatgtgataggataaatgttatca 102  Q
    |||| ||||||||||||||||| ||||||||||||||||||||    
T  4952118 ttattatgtgtgcaccaaacatatgataggataaatgttatca 4952160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 175
Target Start/End: Original strand, 30952148 - 30952263
Alignment:
Q  60 ttatcatgtgtgcaccaaacatgtgataggataaatgttatcaggtcactatcatatcatatccttatccatcttcttatcctatcatttgtttatctta 159  Q
    |||||||||| ||| ||||||  ||||||||||||||||||||  ||  ||||||||||| ||  ||||||  ||| |||| |||||| | | |||  ||    
T  30952148 ttatcatgtgcgcatcaaacacatgataggataaatgttatcatatctatatcatatcatgtctctatccaatttcatatcatatcatgtctctattcta 30952247  T
Q  160 tcatgtgcaccaaacg 175  Q
    ||||| ||||||||||    
T  30952248 tcatgcgcaccaaacg 30952263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 175
Target Start/End: Original strand, 49288373 - 49288435
Alignment:
Q  113 atatcatatccttatccatcttcttatcctatcatttgtttatcttatcatgtgcaccaaacg 175  Q
    ||||||||||||||| || ||||||||| |||||| | | |||| ||||||| ||||||||||    
T  49288373 atatcatatccttattcagcttcttatcatatcatatctatatcatatcatgcgcaccaaacg 49288435  T

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Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 45413204 - 45413042
Alignment:
Q  11 caaaggtgtaccaaacacatgaaaaaataaaattatattttcctattgtttatcatgtgtgcaccaaacatgtgataggataaatgttatcaggtcacta 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| ||||||||||||||||||||||    
T  45413204 caaaggtgtaccaaacacatgaaaaaataaaattatattttcctattatttatcatgtgtgcatcaaacatatgataagataaatgttatcaggtcacta 45413105  T
Q  111 tcatatcatatccttatccatcttcttatcctatcatttgtttatcttatcatgtgcaccaaa 173  Q
    |||||| ||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  45413104 tcatattatatctttatccatcttcttatcctatcatgtgtttatcctatcatgtgcaccaaa 45413042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 9 - 147
Target Start/End: Original strand, 2183946 - 2184084
Alignment:
Q  9 agcaaaggtgtaccaaacacatgaaaaaataaaattatattttcctattgtttatcatgtgtgcaccaaacatgtgataggataaatgttatcaggtcac 108  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||     
T  2183946 agcaaaggtgtaccaaacacatgaaaaaattaaattatattttcctattatttatcatgtgtgcaccaaacatgtgataagataaatgttataaggtcat 2184045  T
Q  109 tatcatatcatatccttatccatcttcttatcctatcat 147  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2184046 tatcatatcatatccttatccatcttcttatcctatcat 2184084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 182
Target Start/End: Original strand, 35075167 - 35075289
Alignment:
Q  60 ttatcatgtgtgcaccaaacatgtgataggataaatgttatcaggtcactatcatatcatatccttatccatcttcttatcctatcatttgtttatctta 159  Q
    |||||||||||| ||||||||||| |||||||||||||||| | |||||||||||||| |||| |||||||  |  ||||| |||||| | | |||| ||    
T  35075167 ttatcatgtgtgtaccaaacatgtaataggataaatgttattatgtcactatcatatcctatcattatccacttatttatcatatcatgtctctatccta 35075266  T
Q  160 tcatgtgcaccaaacgagctcta 182  Q
    ||||||||| ||||||| |||||    
T  35075267 tcatgtgcatcaaacgaactcta 35075289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 175
Target Start/End: Original strand, 34667134 - 34667250
Alignment:
Q  60 ttatcatgtgtgcaccaaacatgtgataggataaatgtt-atcaggtcactatcatatcatatccttatccatcttcttatcctatcatttgtttatctt 158  Q
    ||||||||| |||||||||||| ||| ||||||||| || |||| |||||||||||||| |||| |||||||| || | |||||||| | | | |||| |    
T  34667134 ttatcatgtttgcaccaaacatatgagaggataaatatttatcatgtcactatcatatcctatctttatccattttttaatcctatcctatttctatcgt 34667233  T
Q  159 atcatgtgcaccaaacg 175  Q
     |||||| |||||||||    
T  34667234 gtcatgtacaccaaacg 34667250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 178
Target Start/End: Original strand, 44128538 - 44128634
Alignment:
Q  83 tgataggataaatgtt-atcaggtcactatcatatcatatccttatccatcttcttatcctatcatttgtttatcttatcatgtgcaccaaacgagc 178  Q
    |||||||||||||||| |||  |||||| | ||||| |||  ||||||| | ||||||||||||||   | |||| |||| ||||||||||||||||    
T  44128538 tgataggataaatgtttatcttgtcactgttatatcctatttttatccaacctcttatcctatcatgcttctatcatatcttgtgcaccaaacgagc 44128634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 6458236 - 6458402
Alignment:
Q  9 agcaaaggtgtaccaaacacatgaaaaaataaaattatattttcctattgtttatcatgtgtgcaccaaacatgtgataggataaatgttatcaggtcac 108  Q
    |||||||||||||||||||||||||||||   ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| | ||||     
T  6458236 agcaaaggtgtaccaaacacatgaaaaaaattaattatatttttctattatttatcatgtgtgcaccaaacatgtgataggataaatgttataaagtcat 6458335  T
Q  109 tatcatatcatatccttatccatcttcttatcctatcatttgtttatcttatcatgtgcaccaaacg 175  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||    
T  6458336 tatcatatcatatccttatccatcttcttatcctatcatgtgtttataatatcatgtgcaccaaacg 6458402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 181
Target Start/End: Complemental strand, 40053888 - 40053769
Alignment:
Q  62 atcatgtgtgcaccaaacatgtgataggataaatgttatcaggtcactatcatatcatatccttatccatcttcttatcctatcatttgtttatcttatc 161  Q
    |||||||||||||||||||||||||||||||| |||||||  ||  |||||||||||||||||||||||  |||||||| |||| | | | |||| ||||    
T  40053888 atcatgtgtgcaccaaacatgtgataggataattgttatcttgttgctatcatatcatatccttatccagtttcttatcatatcttatctctatcctatc 40053789  T
Q  162 atgtgcaccaaacgagctct 181  Q
    ||  ||||||||||||||||    
T  40053788 atccgcaccaaacgagctct 40053769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 176
Target Start/End: Original strand, 36242529 - 36242650
Alignment:
Q  60 ttatcatgtgtgcaccaaacatgtgataggataaatgttatcaggtcac-----tatcatatcatatccttatccatcttcttatcctatcatttgttta 154  Q
    |||||||||||||| |||||||||||||  ||||||||||||| |||||     |||||||||||||| ||||||||| | |||| ||||||| |||       
T  36242529 ttatcatgtgtgcatcaaacatgtgataatataaatgttatcatgtcactgtcatatcatatcatatctttatccatccttttattctatcatgtgtcag 36242628  T
Q  155 tcttatcatgtgcaccaaacga 176  Q
    || ||||| |||||||||||||    
T  36242629 tcatatcaggtgcaccaaacga 36242650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 59 - 175
Target Start/End: Original strand, 12027367 - 12027483
Alignment:
Q  59 tttatcatgtgtgcaccaaacatgtgataggataaatgttatcaggtcactatcatatcatatccttatccatcttcttatcctatcatttgtttatctt 158  Q
    |||||||||||||| | |||||  ||| | |||||||||||| |  |||||||||||||||||||||||||| ||||||||| |||| | | | |||  |    
T  12027367 tttatcatgtgtgcccaaaacacatgacatgataaatgttattatatcactatcatatcatatccttatccagcttcttatcatatcttatctctattat 12027466  T
Q  159 atcatgtgcaccaaacg 175  Q
    |||||||||| ||||||    
T  12027467 atcatgtgcatcaaacg 12027483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 1529423 - 1529355
Alignment:
Q  104 gtcactatcatatcatatccttatccatcttcttatcctatcatttgtttatcttatcatgtgcaccaa 172  Q
    ||||||||||||||||||| |||||||| |||| ||| |||||| | | |||| |||||||||||||||    
T  1529423 gtcactatcatatcatatctttatccattttctaatcttatcatatctctatcatatcatgtgcaccaa 1529355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 174
Target Start/End: Original strand, 7671148 - 7671263
Alignment:
Q  60 ttatcatgtgtgcaccaaacatgtgataggataaatg-ttatcaggtcactatcatatcatatccttatccatcttcttatcctatcatttgtttatctt 158  Q
    |||| |||||| || |||||||||||||||||||||| |||||| |||  |||| | || |||||||||| | |||| |||| |||||| | | |||| |    
T  7671148 ttataatgtgtacaacaaacatgtgataggataaatgtttatcatgtctatatcctttcctatccttatctagcttcatatcatatcatatctctatcat 7671247  T
Q  159 atcatgtgcaccaaac 174  Q
    |||||||||| |||||    
T  7671248 atcatgtgcatcaaac 7671263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 18666071 - 18666109
Alignment:
Q  60 ttatcatgtgtgcaccaaacatgtgataggataaatgtt 98  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  18666071 ttatcatgtgtgcatcaaacatgtgataggataaatgtt 18666109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 174
Target Start/End: Original strand, 1345327 - 1345441
Alignment:
Q  60 ttatcatgtgtgcaccaaacatgtgataggataaatgttatcaggtcactatcatatcatatccttatccatcttcttatcctatcatttgtttatctta 159  Q
    ||||||||||||||  |||||  ||||||||||| |||||||| ||   ||| ||||||| || |||||||  ||  |||| |||||| | | |||||||    
T  1345327 ttatcatgtgtgcattaaacacatgataggataagtgttatcatgtttatattatatcatgtctttatccagtttaatatcatatcatgtctctatctta 1345426  T
Q  160 tcatgtgcaccaaac 174  Q
    ||||| |||||||||    
T  1345427 tcatgcgcaccaaac 1345441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 16567107 - 16567069
Alignment:
Q  60 ttatcatgtgtgcaccaaacatgtgataggataaatgtt 98  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  16567107 ttatcatgtgtgcatcaaacatgtgatatgataaatgtt 16567069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 144
Target Start/End: Original strand, 40627037 - 40627122
Alignment:
Q  60 ttatcatgtgtgcaccaaacatgtgataggataaatgt-tatcaggtcactatcatatcatatccttatccatcttcttatcctat 144  Q
    |||||||||||| ||||||||  ||| | ||||| ||| ||||  || |||||||||| ||||||||||||| ||||| |||||||    
T  40627037 ttatcatgtgtgtaccaaacacatgaaatgataagtgtctatcttgttactatcatattatatccttatccaacttctaatcctat 40627122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 31734980 - 31735135
Alignment:
Q  19 taccaaacacatgaaaaaataaaattatattttcctattg---tttatcatgtgtgcaccaaacatgtgataggataaatgttatcaggtcactatcata 115  Q
    |||||||||||| ||||||  ||| ||| ||||||||||    |||||||||| |||||||||||||||||||||||| |||||| | || |||||||||    
T  31734980 taccaaacacattaaaaaa--aaactatgttttcctattagtatttatcatgtatgcaccaaacatgtgataggataagtgttatgatgtaactatcata 31735077  T
Q  116 tcatatccttatccatcttcttatcctatcatttgtttatcttatcatgtgcaccaaa 173  Q
    ||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||    
T  31735078 tcatatccttatccatcttcttatcttatcatatgtttatcctatcatgtgcaccaaa 31735135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 12595516 - 12595444
Alignment:
Q  73 accaaacatgtgataggataaatgttatcaggtcactatcatatcatatccttatccatcttcttatcctatc 145  Q
    |||||||  |||||| ||||| |||||||| |||||||||||||| |||||||||||| ||| ||||| ||||    
T  12595516 accaaacgagtgataagataagtgttatcatgtcactatcatatcctatccttatccaactttttatcatatc 12595444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 32897651 - 32897737
Alignment:
Q  60 ttatcatgtgtgcaccaaacatgtgataggataaatgt-tatcaggtcactatcatatcatatccttatccatcttcttatcctatc 145  Q
    ||||||| | |||||||||| | ||||||||||||||| ||||| ||||||||| ||||||||| | |||||| |||| ||| ||||    
T  32897651 ttatcatatctgcaccaaacgtatgataggataaatgtctatcatgtcactatcctatcatatcttgatccattttctaatcatatc 32897737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 147
Target Start/End: Original strand, 26544410 - 26544453
Alignment:
Q  104 gtcactatcatatcatatccttatccatcttcttatcctatcat 147  Q
    ||||||||||||||||||||||||||| | | ||||||||||||    
T  26544410 gtcactatcatatcatatccttatccaaccttttatcctatcat 26544453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 178
Target Start/End: Complemental strand, 38503713 - 38503614
Alignment:
Q  80 atgtgataggataaatgtt-atcaggtcactatcatatcatatccttatccatcttcttatcctatcatttgtttatcttatcatgtgcaccaaacgagc 178  Q
    ||||||||||||||||||| |||| |||  |||||| || |||||||||| |  ||| |||| |||| | | | |||| |||||||||||||||||||||    
T  38503713 atgtgataggataaatgtttatcatgtctatatcatttcctatccttatctagtttcatatcatatcctatttatatcatatcatgtgcaccaaacgagc 38503614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 175
Target Start/End: Original strand, 22573753 - 22573855
Alignment:
Q  73 accaaacatgtgataggataaatgttatcaggtcactatcatatcatatccttatccatcttcttatcctatcatttgtttatcttatcatgtgcaccaa 172  Q
    |||||||||| |||| ||||| |||||||  |||||| || ||||||||||||||| | ||  ||||| |||||| | | |||  ||||||| |||||||    
T  22573753 accaaacatgggatatgataagtgttatcctgtcactgtcctatcatatccttatcgagctctttatcatatcatgtctctatactatcatgcgcaccaa 22573852  T
Q  173 acg 175  Q
    |||    
T  22573853 acg 22573855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 42180627 - 42180689
Alignment:
Q  60 ttatcatgtgtgcaccaaacatgtgataggataaatgttatcaggtcactatcatatcatatc 122  Q
    |||||||||| ||| ||||| | ||||||||| |||||||||| |||  ||||||||||||||    
T  42180627 ttatcatgtgcgcatcaaacgtatgataggattaatgttatcatgtccttatcatatcatatc 42180689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 7548773 - 7548810
Alignment:
Q  61 tatcatgtgtgcaccaaacatgtgataggataaatgtt 98  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  7548773 tatcatgtgtgcatcaaacatgtgatatgataaatgtt 7548810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 23586059 - 23586159
Alignment:
Q  60 ttatcatgtgtgcaccaaacatgtgataggataaatgttatcaggtcactatcatatcatatccttatccatcttcttatcctatcatttgtttatctta 159  Q
    |||||||||| ||| ||||||  ||||||||||| |||||||| |||  |||| |||||| ||  ||||||  |||||||  |||||| | |||||||||    
T  23586059 ttatcatgtgcgcatcaaacacatgataggataagtgttatcatgtctatatcctatcatgtctctatccaatttcttattatatcatgtctttatctta 23586158  T
Q  160 t 160  Q
    |    
T  23586159 t 23586159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 61 - 167
Target Start/End: Complemental strand, 7010182 - 7010076
Alignment:
Q  61 tatcatgtgtgcaccaaacatgtgataggataaatgttatcaggtcactatcatatcatatccttatccatcttcttatcctatcatttgtttatcttat 160  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||  ||||||||||||| |  |||||||||||| ||| ||||||||    
T  7010182 tatcatgtgtgcaccaaacaggtgataggataaatgttatcatgtcactatcatattctatccttatccatttctttatcctatcatatgtctatcttat 7010083  T
Q  161 catgtgc 167  Q
    |||||||    
T  7010082 catgtgc 7010076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 60 - 181
Target Start/End: Complemental strand, 13416402 - 13416280
Alignment:
Q  60 ttatcatgtgtgcaccaaacatgtgataggataaatgttatcaggtcactatcatatcatatccttatccatc-ttcttatcctatcatttgtttatctt 158  Q
    ||||||| |||||||||||||  | |||||||||   |||||| ||||||||||||||||||||||||||| | || |||||||||| | | | |||| |    
T  13416402 ttatcatatgtgcaccaaacacataataggataatgtttatcatgtcactatcatatcatatccttatccagcttttttatcctatcttgtttatatcat 13416303  T
Q  159 atcatgtgcaccaaacgagctct 181  Q
    |||||| |||||||||| |||||    
T  13416302 atcatgcgcaccaaacgggctct 13416280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 186
Target Start/End: Complemental strand, 16290441 - 16290308
Alignment:
Q  54 tattgtttatcatgtgtgcaccaaacatgtgataggataaatgt-tatcaggtcactatcatatcatatccttatccatcttcttatcctatcatttgtt 152  Q
    |||| |||||||| ||| || | ||||  ||||||||||| ||| ||||| |||||||||||||  |||  |||||||||   ||||| |||||| | |     
T  16290441 tattttttatcatttgtacatcgaacacatgataggataattgtctatcatgtcactatcatattctatttttatccatcacattatcatatcatgtctc 16290342  T
Q  153 tatcttatcatgtgcaccaaacgagctctatata 186  Q
     ||| ||||||| |||||||||||||||||||||    
T  16290341 catcatatcatgcgcaccaaacgagctctatata 16290308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 140
Target Start/End: Original strand, 39466643 - 39466723
Alignment:
Q  61 tatcatgtgtgcaccaaacatgtgataggataaatgt-tatcaggtcactatcatatcatatccttatccatcttcttatc 140  Q
    |||||| ||||| |||||||||||||| ||||||||| ||||  || |||||||||||||||| || |||  |||||||||    
T  39466643 tatcatatgtgccccaaacatgtgatatgataaatgtatatcctgttactatcatatcatatctttgtcctacttcttatc 39466723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 13040372 - 13040410
Alignment:
Q  60 ttatcatgtgtgcaccaaacatgtgataggataaatgtt 98  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  13040372 ttatcatgtgtgcatcaaacatatgataggataaatgtt 13040410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 13110365 - 13110403
Alignment:
Q  60 ttatcatgtgtgcaccaaacatgtgataggataaatgtt 98  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  13110365 ttatcatgtgtgcatcaaacatatgataggataaatgtt 13110403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 26449110 - 26449187
Alignment:
Q  60 ttatcatgtgtgcaccaaacatgtgataggataaatgt-tatcaggtcactatcatatcatatccttatccatcttct 136  Q
    ||||||| |||||||||||    ||||||||||| ||| ||||| ||||||||||||||||||  |||||||| ||||    
T  26449110 ttatcatatgtgcaccaaaagcatgataggataagtgtctatcatgtcactatcatatcatatttttatccattttct 26449187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 175
Target Start/End: Complemental strand, 32529062 - 32528946
Alignment:
Q  60 ttatcatgtgtgcaccaaacatgtgataggataaatgt-tatcaggtcactatcatatcatatccttatccatcttcttatcctatcatttgtttatctt 158  Q
    ||||||| | |||||||||||  |||||| |||| ||| |||||  ||| ||||||||| |||| ||||| | ||| ||||| ||||   | |||||| |    
T  32529062 ttatcatctatgcaccaaacacatgatagaataagtgtctatcatatcagtatcatatcctatctttatctaactttttatcatatcccgtctttatcat 32528963  T
Q  159 atcatgtgcaccaaacg 175  Q
    |||||||||||||||||    
T  32528962 atcatgtgcaccaaacg 32528946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 40778548 - 40778588
Alignment:
Q  105 tcactatcatatcatatccttatccatcttcttatcctatc 145  Q
    ||||||||||||||||| |||||||| ||||||||| ||||    
T  40778548 tcactatcatatcatattcttatccaacttcttatcatatc 40778588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1822 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold1822
Description:

Target: scaffold1822; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 616 - 502
Alignment:
Q  61 tatcatgtgtgcaccaaacatgtgataggataaatgttatcaggtcactatcatatcatatccttatccatcttcttatcctatcatttgtttatcttat 160  Q
    ||||||||||||||||||||  |||||||||| ||||||||| ||||||| |||||| ||||||||||||| || |||||||||||| ||| |||| |||    
T  616 tatcatgtgtgcaccaaacacatgataggatagatgttatcatgtcactaccatatcctatccttatccatttttttatcctatcatgtgtctatcctat 517  T
Q  161 catgtgcaccaaacg 175  Q
    ||||||| |||||||    
T  516 catgtgcgccaaacg 502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 40417660 - 40417745
Alignment:
Q  60 ttatcatgtgtgcaccaaacatgtgataggataaatgttatcaggtcactatcatatcatatccttatccatcttcttatcctatc 145  Q
    |||||||| ||||||||||||| ||||| |||||||||||||| |||||| ||||||| |||||||||||| ||||||||| ||||    
T  40417660 ttatcatgcgtgcaccaaacatatgatatgataaatgttatcatgtcactgtcatatcctatccttatccagcttcttatcatatc 40417745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 48935809 - 48935744
Alignment:
Q  60 ttatcatgtgtgcaccaaacatgtgataggataaatgt-tatcaggtcactatcatatcatatcct 124  Q
    ||||||||||| |||||||||  ||||||||||| ||| ||||| ||||||||| |||| ||||||    
T  48935809 ttatcatgtgtacaccaaacacatgataggataagtgtctatcatgtcactatcctatcctatcct 48935744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 176
Target Start/End: Complemental strand, 6149226 - 6149155
Alignment:
Q  105 tcactatcatatcatatccttatccatcttcttatcctatcatttgtttatcttatcatgtgcaccaaacga 176  Q
    |||||||||||||||||||||||||| ||| |||||||||||| | | |||| |||||||||||||||||||    
T  6149226 tcactatcatatcatatccttatccaactttttatcctatcatgtctctatcctatcatgtgcaccaaacga 6149155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 14439863 - 14439780
Alignment:
Q  93 aatgttatcaggtcactatcatatcatatccttatccatcttcttatcctatcatttgtttatcttatcatgtgcaccaaacga 176  Q
    |||||||||| |||||||||||||| ||||||||| ||| || |||| ||||||  ||| |||| |||||| ||| ||||||||    
T  14439863 aatgttatcatgtcactatcatatcctatccttattcatttttttattctatcacgtgtctatcctatcatttgcgccaaacga 14439780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 17991110 - 17991061
Alignment:
Q  98 tatcaggtcactatcatatcatatccttatccatcttcttatcctatcat 147  Q
    ||||| ||||||||||||| ||||| ||||||| ||||| ||||||||||    
T  17991110 tatcatgtcactatcatattatatctttatccaacttctaatcctatcat 17991061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1793 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1793
Description:

Target: scaffold1793; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 1 - 82
Alignment:
Q  94 atgttatcaggtcactatcatatcatatccttatccatcttcttatcctatcatttgtttatcttatcatgtgcaccaaacg 175  Q
    ||||||||| ||||||| |||||| ||||||||||||| || |||||||||||| ||| |||| |||||||||| |||||||    
T  1 atgttatcatgtcactaccatatcctatccttatccatttttttatcctatcatgtgtctatcctatcatgtgcgccaaacg 82  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 175
Target Start/End: Original strand, 29127449 - 29127566
Alignment:
Q  59 tttatcatgtgtgcaccaaacatgtgataggataaatgtt-atcaggtcactatcatatcatatccttatccatcttcttatcctatcatttgtttatct 157  Q
    ||||||| |||||||||||||   ||| | |||||||||| |||   ||||||||||||||||||||||||||  ||||||||||||||| | | ||||     
T  29127449 tttatcaagtgtgcaccaaacgcatgacaagataaatgtttatcctatcactatcatatcatatccttatccagtttcttatcctatcatgtttctatca 29127548  T
Q  158 tatcatgtgcaccaaacg 175  Q
    ||||||| ||||||||||    
T  29127549 tatcatgcgcaccaaacg 29127566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 145
Target Start/End: Original strand, 37970486 - 37970573
Alignment:
Q  59 tttatcatgtgtgcaccaaacatgtgataggataaatgtt-atcaggtcactatcatatcatatccttatccatcttcttatcctatc 145  Q
    ||||||| ||||||||||||    |||||||||||||||| |||  |||||||||||||| |||||||| ||| |||||||| |||||    
T  37970486 tttatcaagtgtgcaccaaatgcatgataggataaatgtttatcctgtcactatcatatcttatccttaaccagcttcttattctatc 37970573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 39595439 - 39595518
Alignment:
Q  60 ttatcatgtgtgcaccaaacatgtgataggataaatg-ttatcaggtcactatcatatcatatccttatccatcttcttat 139  Q
    ||||||||||||||| |||||| |||||| |||| ||  ||||| ||||||||| |||| |||||||||||| ||| ||||    
T  39595439 ttatcatgtgtgcactaaacatatgatagcataagtgactatcatgtcactatcctatc-tatccttatccaactttttat 39595518  T

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