View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19718_low_3 (Length: 656)

Name: NF19718_low_3
Description: NF19718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19718_low_3
NF19718_low_3
[»] chr5 (4 HSPs)
chr5 (16-639)||(35110518-35111141)
chr5 (540-600)||(9828013-9828073)
chr5 (552-590)||(28717356-28717394)
chr5 (543-592)||(36193613-36193662)
[»] scaffold0318 (1 HSPs)
scaffold0318 (552-600)||(2195-2243)
[»] chr8 (2 HSPs)
chr8 (541-600)||(19923472-19923531)
chr8 (542-600)||(13987325-13987383)
[»] chr4 (2 HSPs)
chr4 (541-600)||(5957043-5957102)
chr4 (543-600)||(28998886-28998943)
[»] chr3 (1 HSPs)
chr3 (543-600)||(11265958-11266015)
[»] chr2 (2 HSPs)
chr2 (548-600)||(24854208-24854260)
chr2 (542-596)||(41358218-41358272)
[»] chr6 (3 HSPs)
chr6 (554-600)||(17247905-17247951)
chr6 (535-600)||(864318-864383)
chr6 (542-598)||(33469088-33469144)
[»] chr7 (3 HSPs)
chr7 (542-583)||(17716156-17716197)
chr7 (543-600)||(23533269-23533326)
chr7 (552-600)||(48582112-48582160)


Alignment Details
Target: chr5 (Bit Score: 575; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 16 - 639
Target Start/End: Complemental strand, 35111141 - 35110518
Alignment:
Q  16 aatattagggtttcaggttgaatcgnnnnnnncagtcatatatcatcatcccttatcctataattcatctcactgaaaaaatcaatagtgtgtgtcctat 115  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35111141 aatattagggtttcaggttgaatcgaaaaaaacagtcatatatcatcatcccttatcctataatttatctcactgaaaaaatcaatagtgtgtgtcctat 35111042  T
Q  116 gaagataaaaatgagtggagagcctcatctgtcgagtagcgtggtcctatggaatggtacatacgtaacctttttcatataaatgataaaacatgataat 215  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35111041 gaagatgaaaatgagtggagagcctcatccgtcgagtagcgtggtcctatgaaatggtacatacgtaacctttttcatataaatgataaaacatgataat 35110942  T
Q  216 ttcaactatggtcaaggttttagatccagaatcctaaggaaggaagaaagaaagaaagccacccacgtgtgatgccaattgtggattccaaatttaagct 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35110941 ttcaactatggtcaaggttttagatccagaatcctaaggaaggaagaaagaaagaaagccacccacgtgtgatgccaattgtggattccaaatttaagct 35110842  T
Q  316 aatgggtctaaggtcttgtcttaatcgaaatacctctttatagtatttgtgaccggcccccttatacgtcccaacattgacaatgaaaacgacattagct 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  35110841 aatgggtctaaggtcttgtcttaatcgaaatacctctttatagtatttgtgaccggccaccttatacgtcccaacattgacaatgaaaacgacattagct 35110742  T
Q  416 tcaaaccttacatgaataattatcaagtttgtggctagctacagtactgattggcccatgtaaacaagttcgatccatattataaggaatttataagtgt 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35110741 tcaaaccttacatgaataattatcaagtttgtggctagctacagtactgattggcccatgtaaacaagttcgatccatattataaggaatttataagtgt 35110642  T
Q  516 ataaaagcagttgaaatgcaaaactatgaaaattgttcttctcccaacaaggattgctcactcccaaccaaacttcccaaaatacaagtcatgcaggtgt 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35110641 ataaaagcagttgaaatgcaaaactatgaaaattgttcttctcccaacaagaattgctcactcccaaccaaactttccaaaatacaagtcatgcaggtgt 35110542  T
Q  616 tgtacccggcgtgacctaagtcat 639  Q
    ||||||||||||||||||||||||    
T  35110541 tgtacccggcgtgacctaagtcat 35110518  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 540 - 600
Target Start/End: Complemental strand, 9828073 - 9828013
Alignment:
Q  540 tatgaaaattgttcttctcccaacaaggattgctcactcccaaccaaacttcccaaaatac 600  Q
    |||||||||||||||||||||| ||||  | | ||||||||||| |||||||| |||||||    
T  9828073 tatgaaaattgttcttctcccatcaagattcgatcactcccaacgaaacttccgaaaatac 9828013  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 552 - 590
Target Start/End: Original strand, 28717356 - 28717394
Alignment:
Q  552 tcttctcccaacaaggattgctcactcccaaccaaactt 590  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  28717356 tcttctcccaacaagttttgctcactcccaaccaaactt 28717394  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 592
Target Start/End: Complemental strand, 36193662 - 36193613
Alignment:
Q  543 gaaaattgttcttctcccaacaaggattgctcactcccaaccaaacttcc 592  Q
    ||||| || ||||||||||||||  ||||||| |||||||||||||||||    
T  36193662 gaaaaatgctcttctcccaacaacaattgctctctcccaaccaaacttcc 36193613  T

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Target: scaffold0318 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 2243 - 2195
Alignment:
Q  552 tcttctcccaacaaggattgctcactcccaaccaaacttcccaaaatac 600  Q
    |||||||||||||||  |||||||||||||||||||||||| |||||||    
T  2243 tcttctcccaacaagatttgctcactcccaaccaaacttccgaaaatac 2195  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 541 - 600
Target Start/End: Complemental strand, 19923531 - 19923472
Alignment:
Q  541 atgaaaattgttcttctcccaacaaggattgctcactcccaaccaaacttcccaaaatac 600  Q
    |||||||||| ||||||||||||||  |  |||||||||||||||||||| |||||||||    
T  19923531 atgaaaattgctcttctcccaacaaaaaaagctcactcccaaccaaactttccaaaatac 19923472  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 542 - 600
Target Start/End: Original strand, 13987325 - 13987383
Alignment:
Q  542 tgaaaattgttcttctcccaacaaggattgctcactcccaaccaaacttcccaaaatac 600  Q
    ||||||||| |||||||||| |||  |||||||||| |||||||||||| |||||||||    
T  13987325 tgaaaattgctcttctcccatcaaaaattgctcacttccaaccaaactttccaaaatac 13987383  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 541 - 600
Target Start/End: Original strand, 5957043 - 5957102
Alignment:
Q  541 atgaaaattgttcttctcccaacaaggattgctcactcccaaccaaacttcccaaaatac 600  Q
    ||||||||||||||||||||| ||||  ||||| |||||||||  |||||||||||||||    
T  5957043 atgaaaattgttcttctcccatcaagatttgcttactcccaactgaacttcccaaaatac 5957102  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 600
Target Start/End: Original strand, 28998886 - 28998943
Alignment:
Q  543 gaaaattgttcttctcccaacaaggattgctcactcccaaccaaacttcccaaaatac 600  Q
    |||||||| | |||||||  |||  |||| ||||||||||||||||||||||||||||    
T  28998886 gaaaattgcttttctcccttcaaaaattgttcactcccaaccaaacttcccaaaatac 28998943  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 600
Target Start/End: Complemental strand, 11266015 - 11265958
Alignment:
Q  543 gaaaattgttcttctcccaacaaggattgctcactcccaaccaaacttcccaaaatac 600  Q
    ||||||| ||||||||||||||   ||||| || ||||||||||||||||||||||||    
T  11266015 gaaaattattcttctcccaacagacattgcacaatcccaaccaaacttcccaaaatac 11265958  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 600
Target Start/End: Complemental strand, 24854260 - 24854208
Alignment:
Q  548 ttgttcttctcccaacaaggattgctcactcccaaccaaacttcccaaaatac 600  Q
    ||||||||||||||||||| || |||| ||| ||||| |||||||||||||||    
T  24854260 ttgttcttctcccaacaagaatcgctccctctcaaccgaacttcccaaaatac 24854208  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 542 - 596
Target Start/End: Complemental strand, 41358272 - 41358218
Alignment:
Q  542 tgaaaattgttcttctcccaacaaggattgctcactcccaaccaaacttcccaaa 596  Q
    |||||| || |||||||| |||||  | |||||||||||||||||||||||||||    
T  41358272 tgaaaaatgctcttctcctaacaaaaaatgctcactcccaaccaaacttcccaaa 41358218  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 554 - 600
Target Start/End: Original strand, 17247905 - 17247951
Alignment:
Q  554 ttctcccaacaaggattgctcactcccaaccaaacttcccaaaatac 600  Q
    ||||||||||||  ||||||| ||||||||||||||||| |||||||    
T  17247905 ttctcccaacaaaaattgctcgctcccaaccaaacttccgaaaatac 17247951  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 600
Target Start/End: Original strand, 864318 - 864383
Alignment:
Q  535 aaaactatgaaaattgttcttctcccaacaaggattgctcactcccaaccaaacttcccaaaatac 600  Q
    |||| |||||||| || |||||||||||||||  ||| |||||||||| ||||||| | |||||||    
T  864318 aaaaatatgaaaaatgctcttctcccaacaagatttgttcactcccaatcaaactttcaaaaatac 864383  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 542 - 598
Target Start/End: Original strand, 33469088 - 33469144
Alignment:
Q  542 tgaaaattgttcttctcccaacaaggattgctcactcccaaccaaacttcccaaaat 598  Q
    ||||||||| |||||||||||||   ||||||||||| ||||| |||||||| ||||    
T  33469088 tgaaaattgctcttctcccaacataaattgctcactctcaaccgaacttccctaaat 33469144  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 542 - 583
Target Start/End: Complemental strand, 17716197 - 17716156
Alignment:
Q  542 tgaaaattgttcttctcccaacaaggattgctcactcccaac 583  Q
    ||||||||||||||||| ||||||  ||||||||||||||||    
T  17716197 tgaaaattgttcttctcacaacaaatattgctcactcccaac 17716156  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 600
Target Start/End: Original strand, 23533269 - 23533326
Alignment:
Q  543 gaaaattgttcttctcccaacaaggattgctcactcccaaccaaacttcccaaaatac 600  Q
    |||||||||||||||||||||||  | ||||||||||||   |||||| |||||||||    
T  23533269 gaaaattgttcttctcccaacaaaaaatgctcactcccataaaaacttaccaaaatac 23533326  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 48582112 - 48582160
Alignment:
Q  552 tcttctcccaacaaggattgctcactcccaaccaaacttcccaaaatac 600  Q
    |||||| |||| |||  |||||||||||||||||||||||| |||||||    
T  48582112 tcttcttccaataagatttgctcactcccaaccaaacttccaaaaatac 48582160  T

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