View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19718_low_30 (Length: 231)
Name: NF19718_low_30
Description: NF19718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19718_low_30 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 39865506 - 39865291
Alignment:
| Q |
1 |
atgatgccttgatatatcaatatgtgtaagatcagtgaactgatttctgcaattgttgtgcagatattcatctaacaatgcttgactttgaattagataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
39865506 |
atgatgccttgatatatcaatatgtgtaagatcagtgaactgatttctgcaattattgtgcagatattcatctaacagaatttgtctttgaattagataa |
39865407 |
T |
|
| Q |
101 |
ttcaattgccggttactgatgcagttattgtatagattttcagtaagcgatattcgaatttgaattgagaatatctctctgaatcagtgctgactttaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39865406 |
ttcaattgccggttactgatgcagttattgtatagattttcagttagcgatatttgaatttgaattgagaatatctctctgaatcagtgctgactttaat |
39865307 |
T |
|
| Q |
201 |
ttgtgatcagccaagt |
216 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
39865306 |
ttgcgatcagccaagt |
39865291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 36342197 - 36341977
Alignment:
| Q |
3 |
gatgccttgatatatcaatatgtgtaagatcagtgaactgatttctgcaattgttgtgcagatattcatctaacaatgcttgactttgaattagataatt |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| || ||||||||||||| |||| |
|
|
| T |
36342197 |
gatgccttgatatatcaatatgtgtaagatcagtgaactgattgctgcaattattgtgcagatattcatctaacaatatttaactttgaattagagaatt |
36342098 |
T |
|
| Q |
103 |
caattgc----cgg---ttactgatgcagttattgtatagattttcagtaagcgatattcgaatttgaattgagaatatctctctgaatcagtgctgact |
195 |
Q |
| |
|
||||||| | | | |||||||||||| || |||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36342097 |
caattgctcatcagtcatcactgatgcagtttttctatagattttcagttagcaatatttgaatttgaattgagaatatctctctgaatcagtgctgact |
36341998 |
T |
|
| Q |
196 |
ttaatttgtgatcagccaagt |
216 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
36341997 |
ttaatttgtgatcagccaagt |
36341977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University