View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19718_low_33 (Length: 209)

Name: NF19718_low_33
Description: NF19718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19718_low_33
NF19718_low_33
[»] chr3 (1 HSPs)
chr3 (1-209)||(51577046-51577254)
[»] chr2 (8 HSPs)
chr2 (1-170)||(2363696-2363860)
chr2 (1-41)||(39224870-39224910)
chr2 (105-168)||(39492803-39492866)
chr2 (11-41)||(39372365-39372395)
chr2 (11-41)||(39379410-39379440)
chr2 (69-168)||(39131501-39131601)
chr2 (1-41)||(39217611-39217651)
chr2 (1-41)||(39396102-39396142)
[»] chr5 (2 HSPs)
chr5 (11-41)||(33563542-33563572)
chr5 (128-168)||(33563679-33563719)
[»] chr4 (1 HSPs)
chr4 (1-58)||(33153266-33153323)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 51577046 - 51577254
Alignment:
Q  1 tgagagcaactgcaagaaaaccaactccattgaaatcaaggatcgtatttcttattcaaattccattctattttatgatacattccattttcatgtacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51577046 tgagagcaactgcaagaaaaccaactccattgaaatcaaggttcgtatttcttattcaaattccattctattttatgatacattccattttcatgtacct 51577145  T
Q  101 gcacgatagttataaataagttgaatgtgaattcaggataaagcaagagaccaagaaattgctagtctggtgcgtttcggataacaatatagaatatgtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51577146 gcacgatagttataaataagttgaatgtgaattcaggataaagcaagagaccaagaaattgctagtctggtgcgtttcggataacaatatagaatatgtg 51577245  T
Q  201 gatttactt 209  Q
    |||||||||    
T  51577246 gatttactt 51577254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 8e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 2363696 - 2363860
Alignment:
Q  1 tgagagcaactgcaagaaaaccaactccattgaaatcaaggatcgtatttcttattcaaattccattctattttatgatacattccattttcatgtacct 100  Q
    ||||||||  ||||||  |||||||||||| |||||||||| || | || ||||||||||||      |||||||||| ||||||||| |||||| ||||    
T  2363696 tgagagcagttgcaaggcaaccaactccatagaaatcaaggttctttttacttattcaaatta-----tattttatgaaacattccatcttcatgcacct 2363790  T
Q  101 gcacgatagttataaataagttgaatgtgaattcaggataaagcaagagaccaagaaattgctagtctgg 170  Q
    | | |  | |||||||||  || ||| |||| ||||||||| |||| |||||||||||||||||||||||    
T  2363791 ggatgtaatttataaatattttcaatttgaaatcaggataaggcaaaagaccaagaaattgctagtctgg 2363860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 39224870 - 39224910
Alignment:
Q  1 tgagagcaactgcaagaaaaccaactccattgaaatcaagg 41  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  39224870 tgagagcagttgcaagaaaaccaactccattgaaatcaagg 39224910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 39492866 - 39492803
Alignment:
Q  105 gatagttataaataagttgaatgtgaattcaggataaagcaagagaccaagaaattgctagtct 168  Q
    ||||||||||||||| |||||| |||| |||||| || || ||||| |||||| ||||||||||    
T  39492866 gatagttataaataatttgaatatgaactcaggacaaggccagagatcaagaagttgctagtct 39492803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 41
Target Start/End: Original strand, 39372365 - 39372395
Alignment:
Q  11 tgcaagaaaaccaactccattgaaatcaagg 41  Q
    |||||||||||||||||||||||||||||||    
T  39372365 tgcaagaaaaccaactccattgaaatcaagg 39372395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 41
Target Start/End: Complemental strand, 39379440 - 39379410
Alignment:
Q  11 tgcaagaaaaccaactccattgaaatcaagg 41  Q
    |||||||||||||||||||||||||||||||    
T  39379440 tgcaagaaaaccaactccattgaaatcaagg 39379410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 39131501 - 39131601
Alignment:
Q  69 tattttatgatacattcca-ttttcatgtacctgcacgatagttataaataagttgaatgtgaattcaggataaagcaagagaccaagaaattgctagtc 167  Q
    |||||||||| | |||||| |||||||   ||| || ||||||||||||||  ||||||||||| |||||| || || ||||| |||||| ||||| |||    
T  39131501 tattttatgaaaaattccaattttcataacccttcatgatagttataaatactttgaatgtgaactcaggacaaggccagagatcaagaagttgcttgtc 39131600  T
Q  168 t 168  Q
    |    
T  39131601 t 39131601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 39217611 - 39217651
Alignment:
Q  1 tgagagcaactgcaagaaaaccaactccattgaaatcaagg 41  Q
    ||||||||  |||||||||| ||||||||||||||||||||    
T  39217611 tgagagcagttgcaagaaaatcaactccattgaaatcaagg 39217651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 39396142 - 39396102
Alignment:
Q  1 tgagagcaactgcaagaaaaccaactccattgaaatcaagg 41  Q
    |||||||| |||||||||||| |||||| ||||||||||||    
T  39396142 tgagagcagctgcaagaaaactaactccgttgaaatcaagg 39396102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 41
Target Start/End: Original strand, 33563542 - 33563572
Alignment:
Q  11 tgcaagaaaaccaactccattgaaatcaagg 41  Q
    |||||||||||||||||||||||||||||||    
T  33563542 tgcaagaaaaccaactccattgaaatcaagg 33563572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 33563679 - 33563719
Alignment:
Q  128 tgaattcaggataaagcaagagaccaagaaattgctagtct 168  Q
    |||||||||||||| || ||||| |||||||||||||||||    
T  33563679 tgaattcaggataaggccagagatcaagaaattgctagtct 33563719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 33153266 - 33153323
Alignment:
Q  1 tgagagcaactgcaagaaaaccaactccattgaaatcaaggatcgtatttcttattca 58  Q
    ||||||||| ||||||| |||||||||||||||||| |||| ||   |||||||||||    
T  33153266 tgagagcaagtgcaagacaaccaactccattgaaataaaggttctcttttcttattca 33153323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University