View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19718_low_34 (Length: 201)

Name: NF19718_low_34
Description: NF19718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19718_low_34
NF19718_low_34
[»] chr3 (29 HSPs)
chr3 (20-182)||(46415228-46415390)
chr3 (130-181)||(45266533-45266584)
chr3 (130-188)||(34470239-34470297)
chr3 (132-181)||(10036826-10036875)
chr3 (131-178)||(38108771-38108818)
chr3 (132-188)||(30194512-30194568)
chr3 (132-188)||(37268094-37268150)
chr3 (132-188)||(37718082-37718138)
chr3 (132-188)||(42321719-42321775)
chr3 (130-181)||(11377180-11377231)
chr3 (130-188)||(46412468-46412526)
chr3 (132-181)||(21196417-21196466)
chr3 (131-188)||(30191664-30191721)
chr3 (132-181)||(44007092-44007141)
chr3 (132-181)||(47759149-47759198)
chr3 (131-188)||(51017264-51017321)
chr3 (130-178)||(13965-14013)
chr3 (133-181)||(21196600-21196648)
chr3 (130-181)||(49275383-49275435)
chr3 (131-178)||(52560281-52560328)
chr3 (132-178)||(18942600-18942646)
chr3 (135-181)||(31401137-31401183)
chr3 (135-181)||(54921405-54921451)
chr3 (132-173)||(40469257-40469298)
chr3 (132-181)||(48098156-48098205)
chr3 (132-188)||(11379769-11379825)
chr3 (141-181)||(44926782-44926822)
chr3 (130-178)||(45031511-45031559)
chr3 (132-188)||(47760922-47760978)
[»] chr1 (19 HSPs)
chr1 (128-188)||(17684486-17684546)
chr1 (130-188)||(39855424-39855482)
chr1 (132-188)||(23344487-23344543)
chr1 (132-181)||(12792323-12792372)
chr1 (130-177)||(28861923-28861970)
chr1 (131-188)||(23341434-23341491)
chr1 (132-181)||(51936609-51936658)
chr1 (132-188)||(15356384-15356440)
chr1 (132-188)||(37780026-37780082)
chr1 (134-177)||(46201226-46201269)
chr1 (130-177)||(51164586-51164633)
chr1 (132-181)||(33286237-33286285)
chr1 (130-179)||(34815684-34815733)
chr1 (132-177)||(37777214-37777259)
chr1 (130-178)||(4911552-4911600)
chr1 (139-179)||(22093321-22093361)
chr1 (137-181)||(37505022-37505066)
chr1 (132-188)||(46191749-46191805)
chr1 (133-181)||(48898883-48898931)
[»] chr7 (11 HSPs)
chr7 (131-188)||(22292790-22292847)
chr7 (131-181)||(2204017-2204067)
chr7 (130-188)||(17185150-17185208)
chr7 (133-181)||(47943253-47943301)
chr7 (133-181)||(47948683-47948731)
chr7 (132-178)||(3615353-3615399)
chr7 (131-188)||(2206294-2206351)
chr7 (135-182)||(31602937-31602984)
chr7 (131-178)||(42013597-42013644)
chr7 (130-182)||(25694056-25694108)
chr7 (130-178)||(42014610-42014658)
[»] chr4 (26 HSPs)
chr4 (131-188)||(10466539-10466596)
chr4 (131-181)||(36390755-36390805)
chr4 (130-188)||(36774641-36774699)
chr4 (132-182)||(52073507-52073557)
chr4 (132-181)||(40729235-40729284)
chr4 (132-188)||(26592848-26592904)
chr4 (130-178)||(9981105-9981153)
chr4 (131-187)||(49792969-49793025)
chr4 (130-181)||(2567254-2567305)
chr4 (132-178)||(205266-205312)
chr4 (132-181)||(2332757-2332806)
chr4 (131-180)||(48093237-48093286)
chr4 (132-188)||(21168417-21168473)
chr4 (135-182)||(9617212-9617259)
chr4 (130-181)||(45936604-45936655)
chr4 (131-181)||(9618427-9618477)
chr4 (129-188)||(45941474-45941535)
chr4 (131-177)||(51025988-51026034)
chr4 (128-181)||(11014296-11014349)
chr4 (130-179)||(12024499-12024548)
chr4 (132-181)||(35142840-35142889)
chr4 (132-177)||(46518349-46518394)
chr4 (132-181)||(49790617-49790666)
chr4 (132-181)||(51029608-51029657)
chr4 (132-188)||(2774984-2775040)
chr4 (132-188)||(43890399-43890455)
[»] chr2 (19 HSPs)
chr2 (130-179)||(6978811-6978860)
chr2 (131-183)||(22712216-22712268)
chr2 (132-188)||(23719308-23719364)
chr2 (132-188)||(24106980-24107036)
chr2 (132-181)||(10602226-10602275)
chr2 (132-188)||(17537140-17537196)
chr2 (130-178)||(19507796-19507844)
chr2 (132-183)||(13329744-13329795)
chr2 (130-181)||(44329751-44329802)
chr2 (131-188)||(5422300-5422357)
chr2 (133-177)||(17112305-17112349)
chr2 (132-188)||(27131365-27131421)
chr2 (133-177)||(34519902-34519946)
chr2 (131-181)||(15630461-15630511)
chr2 (132-182)||(31297640-31297690)
chr2 (131-188)||(4425018-4425075)
chr2 (131-188)||(10361173-10361230)
chr2 (130-182)||(6172105-6172157)
chr2 (132-188)||(24108461-24108517)
[»] chr8 (15 HSPs)
chr8 (132-188)||(33074852-33074908)
chr8 (132-188)||(42167150-42167206)
chr8 (130-188)||(41362980-41363038)
chr8 (132-188)||(8036250-8036306)
chr8 (136-188)||(19243179-19243231)
chr8 (136-188)||(19316363-19316415)
chr8 (133-181)||(26488525-26488573)
chr8 (130-177)||(16583188-16583235)
chr8 (131-178)||(41270336-41270383)
chr8 (131-177)||(38032145-38032191)
chr8 (132-181)||(2809244-2809293)
chr8 (132-181)||(40678289-40678338)
chr8 (132-181)||(42001855-42001904)
chr8 (130-178)||(42095409-42095457)
chr8 (156-188)||(42169860-42169892)
[»] chr5 (18 HSPs)
chr5 (130-181)||(2897949-2898000)
chr5 (132-182)||(2899094-2899144)
chr5 (132-182)||(22965772-22965822)
chr5 (132-181)||(8214316-8214365)
chr5 (132-181)||(27014670-27014719)
chr5 (136-188)||(7483698-7483750)
chr5 (132-188)||(7486610-7486666)
chr5 (129-181)||(39939958-39940010)
chr5 (130-181)||(1690355-1690406)
chr5 (130-181)||(22964665-22964716)
chr5 (131-181)||(36351288-36351338)
chr5 (135-180)||(12936260-12936305)
chr5 (135-180)||(12950415-12950460)
chr5 (133-181)||(16931281-16931329)
chr5 (132-177)||(42056406-42056451)
chr5 (130-182)||(6807958-6808010)
chr5 (154-182)||(8213489-8213517)
chr5 (133-181)||(11356360-11356408)
[»] chr6 (2 HSPs)
chr6 (130-181)||(22019643-22019694)
chr6 (132-181)||(9904651-9904700)
[»] scaffold0004 (2 HSPs)
scaffold0004 (132-181)||(130563-130612)
scaffold0004 (130-181)||(127202-127253)
[»] scaffold0589 (1 HSPs)
scaffold0589 (131-180)||(5574-5623)
[»] scaffold1043 (1 HSPs)
scaffold1043 (130-178)||(2602-2650)


Alignment Details
Target: chr3 (Bit Score: 112; Significance: 8e-57; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 46415390 - 46415228
Alignment:
Q  20 acactgaagcaagggatgatgctactttattttttgaaaactttttctttactactatgattaacctttcaagggcctaaaataaacaacttatctataa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||| |||||||||||||||||||||    
T  46415390 acactgaagcaagggatgatgctactttattttttgaaaactttttcttt---actatgattaacctttcaagggcct-aaataaacaacttatctataa 46415295  T
Q  120 ggattccgacaagaaaattg----cttttttgacaataaatatttcctattgacacaagtaaatgat 182  Q
    ||||||||||||||||||||     |||||| ||||| |||| ||||||||||||||||||||||||    
T  46415294 ggattccgacaagaaaattgatttttttttttacaatgaatacttcctattgacacaagtaaatgat 46415228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 45266584 - 45266533
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  45266584 aagaaaattgcttttttgacattgaatatttcctattgacacaagtaaatga 45266533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 34470239 - 34470297
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    ||||||||| ||||||||||||| |||| ||||||||||||||||||||||| ||||||    
T  34470239 aagaaaatttcttttttgacaatgaatacttcctattgacacaagtaaatgacgctttt 34470297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 10036826 - 10036875
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  10036826 gaaaattgcttttttgacaatgaatacttcctattgacacaagtaaatga 10036875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 131 - 178
Target Start/End: Original strand, 38108771 - 38108818
Alignment:
Q  131 agaaaattgcttttttgacaataaatatttcctattgacacaagtaaa 178  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||    
T  38108771 agaaaattgcttttttgacaataaaaagttcctattgacacaagtaaa 38108818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 30194568 - 30194512
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    |||||||| ||||||||| || |||| ||||||||||||||||||||||| ||||||    
T  30194568 gaaaattgtttttttgaccatgaatacttcctattgacacaagtaaatgacgctttt 30194512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 37268150 - 37268094
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    ||||||||| ||||||||||| |||| |||||||||||| |||||||||| ||||||    
T  37268150 gaaaattgcatttttgacaatgaatacttcctattgacataagtaaatgacgctttt 37268094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 37718138 - 37718082
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    |||||||||||||| |||||  |||| ||||||||||||||||||||||| ||||||    
T  37718138 gaaaattgctttttcgacaacgaatacttcctattgacacaagtaaatgacgctttt 37718082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 42321719 - 42321775
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    |||||||  |||||||||||| |||| ||||||||||||||||||||||||| ||||    
T  42321719 gaaaattatttttttgacaatgaatacttcctattgacacaagtaaatgatgttttt 42321775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 11377180 - 11377231
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    |||||||||||||||| |||||| |||| || ||||||||||||||||||||    
T  11377180 aagaaaattgctttttcgacaatgaatactttctattgacacaagtaaatga 11377231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 46412468 - 46412526
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    ||||||||||||||| |||||   |||| ||||||||||||||||||||||| ||||||    
T  46412468 aagaaaattgcttttctgacatagaatacttcctattgacacaagtaaatgacgctttt 46412526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 21196417 - 21196466
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    ||||||||||||| |||||   ||||||||||||||||||||||||||||    
T  21196417 gaaaattgcttttctgacatagaatatttcctattgacacaagtaaatga 21196466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 30191664 - 30191721
Alignment:
Q  131 agaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    |||||||||||||| |||||   |||| ||||||||||||||||||||||| ||||||    
T  30191664 agaaaattgcttttctgacatagaatacttcctattgacacaagtaaatgacgctttt 30191721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 44007141 - 44007092
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    |||||||| |||||||||||| |||||||||||| |||| ||||||||||    
T  44007141 gaaaattgtttttttgacaatgaatatttcctatcgacataagtaaatga 44007092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 47759149 - 47759198
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    ||||||| ||||||||||||| |||||||| |||||||| ||||||||||    
T  47759149 gaaaattacttttttgacaatgaatatttcttattgacataagtaaatga 47759198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 51017321 - 51017264
Alignment:
Q  131 agaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    |||||||||||||||||||||| |||| ||||||||||| |||| | |||| ||||||    
T  51017321 agaaaattgcttttttgacaatgaatacttcctattgacgcaagaatatgacgctttt 51017264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 14013 - 13965
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaaa 178  Q
    ||||||||||||||||| ||||| ||  |||||||||||||||||||||    
T  14013 aagaaaattgcttttttaacaatgaaactttcctattgacacaagtaaa 13965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 21196648 - 21196600
Alignment:
Q  133 aaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    ||||||||||||||||||   |||| |||||||||||||||||||||||    
T  21196648 aaaattgcttttttgacatagaatacttcctattgacacaagtaaatga 21196600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 49275435 - 49275383
Alignment:
Q  130 aagaaaattgcttttttg-acaataaatatttcctattgacacaagtaaatga 181  Q
    |||||||||||||||||| ||||| ||||||| |||||||||||| |||||||    
T  49275435 aagaaaattgcttttttggacaatcaatattttctattgacacaaataaatga 49275383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 131 - 178
Target Start/End: Original strand, 52560281 - 52560328
Alignment:
Q  131 agaaaattgcttttttgacaataaatatttcctattgacacaagtaaa 178  Q
    |||||||||||||||||||||| ||   ||||||||||||||||||||    
T  52560281 agaaaattgcttttttgacaatgaaaccttcctattgacacaagtaaa 52560328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 18942600 - 18942646
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaa 178  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||||    
T  18942600 gaaaattgtttttctgacaatgaaaatttcctattgacacaagtaaa 18942646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 31401183 - 31401137
Alignment:
Q  135 aattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    |||||| ||||||||| | ||||||| ||||||||||||||||||||    
T  31401183 aattgcctttttgacattgaatattttctattgacacaagtaaatga 31401137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 54921405 - 54921451
Alignment:
Q  135 aattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    |||||||||||||||| | |||| || ||||||||||||||||||||    
T  54921405 aattgcttttttgacagtgaatactttctattgacacaagtaaatga 54921451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 40469298 - 40469257
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaa 173  Q
    ||||||||||||||||||| | |||| |||||||||||||||    
T  40469298 gaaaattgcttttttgacattgaatacttcctattgacacaa 40469257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 48098205 - 48098156
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    ||||||||||||| |||||   |||| |||||||||||||||||||||||    
T  48098205 gaaaattgcttttctgacatagaatacttcctattgacacaagtaaatga 48098156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 11379825 - 11379769
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    ||||||||||||| |||||   |||| || |||||||||||||||||||| ||||||    
T  11379825 gaaaattgcttttctgacatagaatactttctattgacacaagtaaatgacgctttt 11379769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 44926782 - 44926822
Alignment:
Q  141 ttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    |||| ||||||| |||| |||||||||||||||||||||||    
T  44926782 ttttatgacaatgaatacttcctattgacacaagtaaatga 44926822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 45031511 - 45031559
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaaa 178  Q
    ||||||||||||||||||||||| ||   ||||||||||||||| ||||    
T  45031511 aagaaaattgcttttttgacaatgaaatcttcctattgacacaaataaa 45031559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 47760978 - 47760922
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    ||||||||||||| |||||   |||| |||||||||| |||||||||||| ||||||    
T  47760978 gaaaattgcttttctgacatagaatacttcctattgatacaagtaaatgacgctttt 47760922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 17684486 - 17684546
Alignment:
Q  128 acaagaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||    
T  17684486 acaagaaaattgcttttttgacaatgaatacttcctattgacacaagtaaatgacgctttt 17684546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 39855424 - 39855482
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||    
T  39855424 aagaaaattgcttttttgacaatgaatacttcctattgacacaagtaaatgacgctttt 39855482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 23344543 - 23344487
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    ||||||||||||||||||||| ||||||| ||||| |||||||||||||| ||||||    
T  23344543 gaaaattgcttttttgacaatgaatattttctattaacacaagtaaatgacgctttt 23344487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 12792372 - 12792323
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    ||||||||||||||||||||| |||| |||||| ||||||||||||||||    
T  12792372 gaaaattgcttttttgacaatgaatacttcctactgacacaagtaaatga 12792323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 28861923 - 28861970
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaa 177  Q
    |||||||||||||||||||||  ||||| |||||||||||||||||||    
T  28861923 aagaaaattgcttttttgacatgaaatacttcctattgacacaagtaa 28861970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 23341434 - 23341491
Alignment:
Q  131 agaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    ||||||||||||||||||||   |||| ||| |||||| |||||||||||||||||||    
T  23341434 agaaaattgcttttttgacatataatacttcttattgatacaagtaaatgatgctttt 23341491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 51936658 - 51936609
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    ||||||||||||||||||| | |||| |||||||||||| ||||||||||    
T  51936658 gaaaattgcttttttgacattgaatacttcctattgacataagtaaatga 51936609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 15356440 - 15356384
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    ||||||||||||| |||||   |||| ||||||||||||||||||||||||| ||||    
T  15356440 gaaaattgcttttctgacatagaatacttcctattgacacaagtaaatgatgttttt 15356384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 37780082 - 37780026
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    |||||||| |||| |||||   |||||||||||||||||||||||||||| ||||||    
T  37780082 gaaaattgtttttctgacatagaatatttcctattgacacaagtaaatgacgctttt 37780026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 177
Target Start/End: Complemental strand, 46201269 - 46201226
Alignment:
Q  134 aaattgcttttttgacaataaatatttcctattgacacaagtaa 177  Q
    |||||||||||||||||   ||||||||||||||||||||||||    
T  46201269 aaattgcttttttgacatggaatatttcctattgacacaagtaa 46201226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 51164586 - 51164633
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaa 177  Q
    |||||||||||||||| ||||  ||||| |||||||||||||||||||    
T  51164586 aagaaaattgctttttagacataaaatacttcctattgacacaagtaa 51164633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 33286285 - 33286237
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    ||||||||||||||||||||| |||| |||||||||| |||| |||||||    
T  33286285 gaaaattgcttttttgacaatgaatacttcctattga-acaaataaatga 33286237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 34815733 - 34815684
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaaat 179  Q
    ||||||||||||||| |||||   ||||||||||||||||||||| ||||    
T  34815733 aagaaaattgcttttctgacatagaatatttcctattgacacaagcaaat 34815684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 37777214 - 37777259
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaa 177  Q
    |||||||||| |||| ||||| ||||||||||||||||| ||||||    
T  37777214 gaaaattgctgtttttacaatgaatatttcctattgacataagtaa 37777259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 4911552 - 4911600
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaaa 178  Q
    |||||||||| |||||||||||| || | ||| ||||||||||||||||    
T  4911552 aagaaaattgtttttttgacaatgaaaacttcatattgacacaagtaaa 4911600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 22093321 - 22093361
Alignment:
Q  139 gcttttttgacaataaatatttcctattgacacaagtaaat 179  Q
    |||||| ||||||| || |||||||||||||||||||||||    
T  22093321 gcttttatgacaatcaaaatttcctattgacacaagtaaat 22093361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 37505066 - 37505022
Alignment:
Q  137 ttgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    |||||||||||| | | |||| |||||||||||||||||||||||    
T  37505066 ttgcttttttgatattgaatacttcctattgacacaagtaaatga 37505022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 46191749 - 46191805
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    ||||||||||||| |||||  | | | ||||||||||||||||||||||| ||||||    
T  46191749 gaaaattgcttttctgacataagaaacttcctattgacacaagtaaatgacgctttt 46191805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 48898883 - 48898931
Alignment:
Q  133 aaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    |||||||||||| |||||  ||||||||| |||||||| ||||||||||    
T  48898883 aaaattgcttttctgacatcaaatatttcatattgacaaaagtaaatga 48898931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 22292847 - 22292790
Alignment:
Q  131 agaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    |||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  22292847 agaaaattacttttttgacaatgaatattttctattgacacaagtaaatgatgctttt 22292790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 2204017 - 2204067
Alignment:
Q  131 agaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  2204017 agaaaattgcttttttgacaatgaatacttcctattgacacaagtaaatga 2204067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 17185208 - 17185150
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    |||||||||||||||| |||||| |||| ||||||||||||||||||||||| ||||||    
T  17185208 aagaaaattgctttttcgacaatgaatacttcctattgacacaagtaaatgacgctttt 17185150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 47943253 - 47943301
Alignment:
Q  133 aaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    ||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  47943253 aaaattgattttttgacaatgaatattttctattgacacaagtaaatga 47943301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 47948683 - 47948731
Alignment:
Q  133 aaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    ||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  47948683 aaaattgattttttgacaatgaatattttctattgacacaagtaaatga 47948731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 3615399 - 3615353
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaa 178  Q
    ||||||||||||||||||||| |||| ||||||||||||||| ||||    
T  3615399 gaaaattgcttttttgacaatgaatacttcctattgacacaaataaa 3615353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 2206351 - 2206294
Alignment:
Q  131 agaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    |||||||||||||| |||||   |||| ||||||||||||||||||||||||| ||||    
T  2206351 agaaaattgcttttctgacatagaatacttcctattgacacaagtaaatgatgttttt 2206294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 31602984 - 31602937
Alignment:
Q  135 aattgcttttttgacaataaatatttcctattgacacaagtaaatgat 182  Q
    |||||||||||||| | | ||||||| |||||||||||||||||||||    
T  31602984 aattgcttttttgatattgaatattttctattgacacaagtaaatgat 31602937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 131 - 178
Target Start/End: Original strand, 42013597 - 42013644
Alignment:
Q  131 agaaaattgcttttttgacaataaatatttcctattgacacaagtaaa 178  Q
    |||||||||||||||||||||| ||   ||||||||||||||||||||    
T  42013597 agaaaattgcttttttgacaatgaaatcttcctattgacacaagtaaa 42013644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 25694056 - 25694108
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgat 182  Q
    |||||||||| |||||||||| | |||| || ||||||||| |||||||||||    
T  25694056 aagaaaattgtttttttgacattgaatacttgctattgacataagtaaatgat 25694108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 42014658 - 42014610
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaaa 178  Q
    ||||||||||||||| ||||||| || | || |||||||||||||||||    
T  42014658 aagaaaattgcttttctgacaatgaaaaatttctattgacacaagtaaa 42014610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 10466539 - 10466596
Alignment:
Q  131 agaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||    
T  10466539 agaaaattgcttttttgacaatgaatacttcctattgacacaagtaaatgacgctttt 10466596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 36390755 - 36390805
Alignment:
Q  131 agaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  36390755 agaaaattgctttcttgacaataaatacttcctattgacacaagtaaatga 36390805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 36774641 - 36774699
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    |||||||||| |||||||||||| |||| |||||||||||||| |||||||||||||||    
T  36774641 aagaaaattgtttttttgacaatgaatacttcctattgacacaggtaaatgatgctttt 36774699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 52073507 - 52073557
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgat 182  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  52073507 gaaaattgtttttttgacaatgaatatttcctattgacacaagtaaatgat 52073557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 40729235 - 40729284
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  40729235 gaaaattgattttttgacaatgaatatttcctattgacacaagtaaatga 40729284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 26592904 - 26592848
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    ||||||||||||||||| ||| ||||||||||||| |||||||||||||| ||||||    
T  26592904 gaaaattgcttttttgataatgaatatttcctattaacacaagtaaatgacgctttt 26592848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 9981105 - 9981153
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaaa 178  Q
    ||||||||||||||||||||||  |||| ||||||||||||||||||||    
T  9981105 aagaaaattgcttttttgacaaggaatacttcctattgacacaagtaaa 9981153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 49793025 - 49792969
Alignment:
Q  131 agaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgcttt 187  Q
    ||||||||| ||||||||| || |||| ||||||||||||||||||||||| |||||    
T  49793025 agaaaattgtttttttgacgatgaatacttcctattgacacaagtaaatgacgcttt 49792969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 2567254 - 2567305
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    |||||||||| |||||||||||| |||| ||||||||||||||| |||||||    
T  2567254 aagaaaattgtttttttgacaatgaatacttcctattgacacaaataaatga 2567305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 205312 - 205266
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaa 178  Q
    ||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  205312 gaaaattgcttttttcacaatgaatatttcctattgacacaaataaa 205266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 2332757 - 2332806
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    ||||||||||||||||||||| |||| |||||||||||| || |||||||    
T  2332757 gaaaattgcttttttgacaatgaatacttcctattgacataaataaatga 2332806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 48093237 - 48093286
Alignment:
Q  131 agaaaattgcttttttgacaataaatatttcctattgacacaagtaaatg 180  Q
    |||||| || |||||||||||| |||| ||||||||||||||||||||||    
T  48093237 agaaaaatgtttttttgacaatgaatacttcctattgacacaagtaaatg 48093286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 21168417 - 21168473
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    ||||||||||||| |||||   |||| ||||||||||||||||||||||| ||||||    
T  21168417 gaaaattgcttttctgacatagaatacttcctattgacacaagtaaatgacgctttt 21168473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 9617212 - 9617259
Alignment:
Q  135 aattgcttttttgacaataaatatttcctattgacacaagtaaatgat 182  Q
    ||||||||||||||||   |||| ||||||||||||||||||||||||    
T  9617212 aattgcttttttgacatcgaatacttcctattgacacaagtaaatgat 9617259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 45936604 - 45936655
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    ||||||||||||||| |||||   |||| |||||||||||||||||||||||    
T  45936604 aagaaaattgcttttctgacatagaatacttcctattgacacaagtaaatga 45936655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 9618477 - 9618427
Alignment:
Q  131 agaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    |||||| ||||||||||||| | |||| ||||||| |||||||||||||||    
T  9618477 agaaaaatgcttttttgacattgaatacttcctatcgacacaagtaaatga 9618427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 45941535 - 45941474
Alignment:
Q  129 caagaaaattgcttttttg--acaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    ||||||||||| ||||||   ||||| ||||||||||||||||||| |||||||| ||||||    
T  45941535 caagaaaattgttttttttgtacaatgaatatttcctattgacacatgtaaatgacgctttt 45941474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 51025988 - 51026034
Alignment:
Q  131 agaaaattgcttttttgacaataaatatttcctattgacacaagtaa 177  Q
    ||||||||||||||||||||   |||| |||||||||||||||||||    
T  51025988 agaaaattgcttttttgacatagaatacttcctattgacacaagtaa 51026034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 11014296 - 11014349
Alignment:
Q  128 acaagaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    |||||||||||||||||||||||   |||| |||||| | ||||||||||||||    
T  11014296 acaagaaaattgcttttttgacatagaataattcctactaacacaagtaaatga 11014349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 12024499 - 12024548
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaaat 179  Q
    |||||||||| |||| ||||||| || | |||||||||||||||||||||    
T  12024499 aagaaaattgattttctgacaatgaaaacttcctattgacacaagtaaat 12024548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 35142840 - 35142889
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    |||||||||| |||||||| | |||  |||||||||||||||||||||||    
T  35142840 gaaaattgctattttgacattgaatgcttcctattgacacaagtaaatga 35142889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 46518394 - 46518349
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaa 177  Q
    |||||||||||||||||||   |||| |||||||||||||||||||    
T  46518394 gaaaattgcttttttgacatggaatacttcctattgacacaagtaa 46518349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 49790617 - 49790666
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    ||||||||||||| |||||   |||| |||||||||||||||||||||||    
T  49790617 gaaaattgcttttctgacatagaatacttcctattgacacaagtaaatga 49790666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 51029657 - 51029608
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    ||||||||||||| |||||   |||| |||||||||||||||||||||||    
T  51029657 gaaaattgcttttctgacatagaatacttcctattgacacaagtaaatga 51029608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 2775040 - 2774984
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    ||||||||||||| |||||   ||||||  |||||||||||||||||||| ||||||    
T  2775040 gaaaattgcttttctgacatagaatattctctattgacacaagtaaatgacgctttt 2774984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 43890455 - 43890399
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    |||||||||||||| ||||   |||| ||||||||||| ||||||||||| ||||||    
T  43890455 gaaaattgctttttggacatagaatacttcctattgactcaagtaaatgacgctttt 43890399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 6978860 - 6978811
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaaat 179  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6978860 aagaaaattgcttttttgacaatgaatatttcctattgacacaagtaaat 6978811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 22712268 - 22712216
Alignment:
Q  131 agaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatg 183  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  22712268 agaaaattgcttttttgacaatgaataattcctattgacacaagtaaatgatg 22712216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 23719308 - 23719364
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    ||||||| ||||||||||||| |||| ||||||||||||||||||||||| ||||||    
T  23719308 gaaaattccttttttgacaatgaatacttcctattgacacaagtaaatgacgctttt 23719364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 24106980 - 24107036
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    ||||||| ||||||||||||| |||| ||||||||||||||||||||||| ||||||    
T  24106980 gaaaattccttttttgacaatgaatacttcctattgacacaagtaaatgacgctttt 24107036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 10602275 - 10602226
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    ||||||||||||||||||| | |||| |||||||||||||||||||||||    
T  10602275 gaaaattgcttttttgacattgaatacttcctattgacacaagtaaatga 10602226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 17537140 - 17537196
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    ||||||||||||||| ||||| |||||||| ||||| ||||||||||||| ||||||    
T  17537140 gaaaattgctttttttacaatgaatatttcttattgtcacaagtaaatgacgctttt 17537196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 19507796 - 19507844
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaaa 178  Q
    ||||||||||||||||||||||| |||| ||||||||||||||| ||||    
T  19507796 aagaaaattgcttttttgacaatgaatacttcctattgacacaattaaa 19507844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 13329744 - 13329795
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatg 183  Q
    |||||||| |||||||||||| |||| |||||||| ||||||||||||||||    
T  13329744 gaaaattgtttttttgacaatgaatacttcctattaacacaagtaaatgatg 13329795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 44329802 - 44329751
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    |||||||||| ||||||||||  ||||||||||||||| |||||||||||||    
T  44329802 aagaaaattgtttttttgacataaaatatttcctattggcacaagtaaatga 44329751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 5422357 - 5422300
Alignment:
Q  131 agaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    ||||||||||||||||||||   |||| || |||||||||||||||||||| ||||||    
T  5422357 agaaaattgcttttttgacagcgaatactttctattgacacaagtaaatgacgctttt 5422300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 17112305 - 17112349
Alignment:
Q  133 aaaattgcttttttgacaataaatatttcctattgacacaagtaa 177  Q
    ||||||||||||||||||  ||||| |||||||||||||||||||    
T  17112305 aaaattgcttttttgacataaaatacttcctattgacacaagtaa 17112349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 27131421 - 27131365
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    ||||||||||||| |||||  ||||| || |||||||||||||||||||||| ||||    
T  27131421 gaaaattgcttttctgacataaaatactttctattgacacaagtaaatgatgttttt 27131365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 34519902 - 34519946
Alignment:
Q  133 aaaattgcttttttgacaataaatatttcctattgacacaagtaa 177  Q
    ||||||||||||||||||  ||||| |||||||||||||||||||    
T  34519902 aaaattgcttttttgacataaaatacttcctattgacacaagtaa 34519946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 15630511 - 15630461
Alignment:
Q  131 agaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    ||||| |||||||||||||| | |||| ||||||||||||||| |||||||    
T  15630511 agaaagttgcttttttgacattgaatacttcctattgacacaaataaatga 15630461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 31297640 - 31297690
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgat 182  Q
    ||||||||||||| |||||   |||| ||||||||||||||||||||||||    
T  31297640 gaaaattgcttttctgacatagaatacttcctattgacacaagtaaatgat 31297690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 4425018 - 4425075
Alignment:
Q  131 agaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    ||||||||| |||| |||||   |||| ||||||||||||||||||||||| ||||||    
T  4425018 agaaaattgattttctgacatagaatacttcctattgacacaagtaaatgacgctttt 4425075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 10361230 - 10361173
Alignment:
Q  131 agaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    ||||||||| |||| |||||  ||||| |||||||||||| |||||||||| ||||||    
T  10361230 agaaaattgtttttctgacataaaatacttcctattgacataagtaaatgacgctttt 10361173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 6172105 - 6172157
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgat 182  Q
    |||| |||||||||||||| | | |||| |||||||||||| |||||||||||    
T  6172105 aagagaattgcttttttgatattgaatacttcctattgacataagtaaatgat 6172157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 24108517 - 24108461
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    |||||||| |||| |||||   |||| ||||||||||||||||||||||||| ||||    
T  24108517 gaaaattgtttttctgacatagaatacttcctattgacacaagtaaatgatgttttt 24108461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 33074908 - 33074852
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||    
T  33074908 gaaaattgcttttttgacaatgaatatttcatattgacacaagtaaatgacgctttt 33074852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 42167150 - 42167206
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    |||||||| |||||||||||| |||| ||||||||||||||||||||||| ||||||    
T  42167150 gaaaattggttttttgacaatgaatacttcctattgacacaagtaaatgacgctttt 42167206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 41362980 - 41363038
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    |||||||||| |||| |||||  ||||| ||||||||||||||||||||||| ||||||    
T  41362980 aagaaaattgtttttctgacataaaatacttcctattgacacaagtaaatgacgctttt 41363038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 8036250 - 8036306
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    ||||||||||||| |||||   |||| ||||||||||||||||||||||| ||||||    
T  8036250 gaaaattgcttttctgacatagaatacttcctattgacacaagtaaatgacgctttt 8036306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 19243231 - 19243179
Alignment:
Q  136 attgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    ||||||||||||||||| |||| ||||||| |||||||| |||||||| ||||    
T  19243231 attgcttttttgacaatgaatacttcctatcgacacaaggaaatgatgttttt 19243179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 19316415 - 19316363
Alignment:
Q  136 attgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    ||||||||||||||||| |||| ||||||| |||||||| |||||||| ||||    
T  19316415 attgcttttttgacaatgaatacttcctatcgacacaaggaaatgatgttttt 19316363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 26488573 - 26488525
Alignment:
Q  133 aaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    |||||||||||||||||||| |||| ||| |||||||| ||||||||||    
T  26488573 aaaattgcttttttgacaatgaatacttcatattgacataagtaaatga 26488525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 16583188 - 16583235
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaa 177  Q
    |||||||||||||||||||||   |||| |||||||||||||||||||    
T  16583188 aagaaaattgcttttttgacatggaatacttcctattgacacaagtaa 16583235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 131 - 178
Target Start/End: Complemental strand, 41270383 - 41270336
Alignment:
Q  131 agaaaattgcttttttgacaataaatatttcctattgacacaagtaaa 178  Q
    |||||||||||||||||||| | || ||||| ||||||||||||||||    
T  41270383 agaaaattgcttttttgacagtgaaaatttcatattgacacaagtaaa 41270336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 38032145 - 38032191
Alignment:
Q  131 agaaaattgcttttttgacaataaatatttcctattgacacaagtaa 177  Q
    |||||||||| |||||||||   ||||||||||||||||||||||||    
T  38032145 agaaaattgcctttttgacatagaatatttcctattgacacaagtaa 38032191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 2809293 - 2809244
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    |||||||| |||||||||| | |||| ||| |||||||||||||||||||    
T  2809293 gaaaattgtttttttgacattgaatacttcttattgacacaagtaaatga 2809244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 40678338 - 40678289
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    |||||||| ||||||||||   |||| |||||||||||||||||||||||    
T  40678338 gaaaattgtttttttgacatagaatacttcctattgacacaagtaaatga 40678289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 42001904 - 42001855
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    ||||||||||||||||||| | |||| ||| | |||||||||||||||||    
T  42001904 gaaaattgcttttttgacattcaatacttctttttgacacaagtaaatga 42001855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 42095409 - 42095457
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaaa 178  Q
    |||||||||| |||| ||||||| || |||| |||||||||||||||||    
T  42095409 aagaaaattgattttatgacaatgaaaattttctattgacacaagtaaa 42095457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 188
Target Start/End: Complemental strand, 42169892 - 42169860
Alignment:
Q  156 tatttcctattgacacaagtaaatgatgctttt 188  Q
    |||||||||||||||||||||||||||| ||||    
T  42169892 tatttcctattgacacaagtaaatgatgttttt 42169860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 2897949 - 2898000
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    |||| |||||||||||||||| | ||||||||||||||||||||||||||||    
T  2897949 aagagaattgcttttttgacattgaatatttcctattgacacaagtaaatga 2898000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 2899144 - 2899094
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgat 182  Q
    |||||||| |||||||||| | |||||||||||||||||||||||||||||    
T  2899144 gaaaattgtttttttgacattgaatatttcctattgacacaagtaaatgat 2899094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 22965822 - 22965772
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgat 182  Q
    ||||||||||||||||||| | |||| ||||||||||||||||||||||||    
T  22965822 gaaaattgcttttttgacattgaatacttcctattgacacaagtaaatgat 22965772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 8214365 - 8214316
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    ||||||||||||||||||| | |||| |||||||||||||||||||||||    
T  8214365 gaaaattgcttttttgacattgaatacttcctattgacacaagtaaatga 8214316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 27014719 - 27014670
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    ||||||||||||||||||||| ||||||||||||| |||||| |||||||    
T  27014719 gaaaattgcttttttgacaatgaatatttcctattaacacaattaaatga 27014670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 7483698 - 7483750
Alignment:
Q  136 attgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    |||| |||||||||||| |||| ||||||||||||||||||||||| ||||||    
T  7483698 attgtttttttgacaatgaatacttcctattgacacaagtaaatgacgctttt 7483750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 7486666 - 7486610
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgatgctttt 188  Q
    ||||||||||||||| ||||| |||| || |||||||||||||||||||| ||||||    
T  7486666 gaaaattgctttttttacaatgaatactttctattgacacaagtaaatgacgctttt 7486610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 39939958 - 39940010
Alignment:
Q  129 caagaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    ||||||||||| |||||||||| | |||| |||||||||||||||||||||||    
T  39939958 caagaaaattgtttttttgacattgaatacttcctattgacacaagtaaatga 39940010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 1690355 - 1690406
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    |||||||||| | |||||||||| |||| |||||||||||||||||||||||    
T  1690355 aagaaaattgttgttttgacaatgaatacttcctattgacacaagtaaatga 1690406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 22964665 - 22964716
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    ||||||||||||||||||||| | |||| |||||||||||| ||||||||||    
T  22964665 aagaaaattgcttttttgacattgaatacttcctattgacataagtaaatga 22964716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 36351338 - 36351288
Alignment:
Q  131 agaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    |||||| || |||||||||||| |||| |||||||||||||||||||||||    
T  36351338 agaaaaatgtttttttgacaatgaatacttcctattgacacaagtaaatga 36351288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 12936260 - 12936305
Alignment:
Q  135 aattgcttttttgacaataaatatttcctattgacacaagtaaatg 180  Q
    |||||||||||||||| | |||| ||||||||||||||||||||||    
T  12936260 aattgcttttttgacattgaatacttcctattgacacaagtaaatg 12936305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 12950415 - 12950460
Alignment:
Q  135 aattgcttttttgacaataaatatttcctattgacacaagtaaatg 180  Q
    |||||||||||||||| | |||| ||||||||||||||||||||||    
T  12950415 aattgcttttttgacattgaatacttcctattgacacaagtaaatg 12950460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 16931329 - 16931281
Alignment:
Q  133 aaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    ||||||||||||||||||   ||||||||||||||||| ||||||||||    
T  16931329 aaaattgcttttttgacatagaatatttcctattgacataagtaaatga 16931281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 42056406 - 42056451
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaa 177  Q
    ||||||||||||||||||| | ||||||| ||||||| ||||||||    
T  42056406 gaaaattgcttttttgacattgaatattttctattgatacaagtaa 42056451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 6808010 - 6807958
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaaatgat 182  Q
    ||||||||||||||| ||| |  ||| ||||| ||||||||||||||||||||    
T  6808010 aagaaaattgcttttctgaaatcaaaaatttcatattgacacaagtaaatgat 6807958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 8213489 - 8213517
Alignment:
Q  154 aatatttcctattgacacaagtaaatgat 182  Q
    |||||||||||||||||||||||||||||    
T  8213489 aatatttcctattgacacaagtaaatgat 8213517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 11356360 - 11356408
Alignment:
Q  133 aaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    |||||||||||| |||||  ||||| || ||||||||||||||||||||    
T  11356360 aaaattgcttttctgacataaaatactttctattgacacaagtaaatga 11356408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 22019694 - 22019643
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    |||||||||| ||||||||||  ||||||||||||||| |||||||||||||    
T  22019694 aagaaaattgtttttttgacataaaatatttcctattggcacaagtaaatga 22019643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 9904700 - 9904651
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    ||||||||||||||||||| | |||| || ||||||||||||||||||||    
T  9904700 gaaaattgcttttttgacattgaatactttctattgacacaagtaaatga 9904651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 130612 - 130563
Alignment:
Q  132 gaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    |||||||||||||||||||   |||| |||||||||||||||||||||||    
T  130612 gaaaattgcttttttgacatagaatacttcctattgacacaagtaaatga 130563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 127202 - 127253
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaaatga 181  Q
    ||||||||||||||| ||||||  |||| ||||||| |||||||||||||||    
T  127202 aagaaaattgcttttctgacaaagaatacttcctatcgacacaagtaaatga 127253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0589 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0589
Description:

Target: scaffold0589; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 5623 - 5574
Alignment:
Q  131 agaaaattgcttttttgacaataaatatttcctattgacacaagtaaatg 180  Q
    ||||||||| |||||| ||||| |||| ||| ||||||||||||||||||    
T  5623 agaaaattgttttttttacaatgaatacttcttattgacacaagtaaatg 5574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 2602 - 2650
Alignment:
Q  130 aagaaaattgcttttttgacaataaatatttcctattgacacaagtaaa 178  Q
    ||||||||||||||| ||||||| |  | ||||||||||||||||||||    
T  2602 aagaaaattgcttttctgacaatgacaacttcctattgacacaagtaaa 2650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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