View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19718_low_5 (Length: 529)
Name: NF19718_low_5
Description: NF19718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19718_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 445; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 6 - 513
Target Start/End: Original strand, 2591906 - 2592414
Alignment:
| Q |
6 |
agtagcataggtactcgtatggctt-gaacctttcacatgaagatgaaaccctacgaacattggaaaccattaggaacagatttttgacaagcactaagt |
104 |
Q |
| |
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|||| |||| ||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2591906 |
agtaacataagtactcgtatggctttgaacctttcacatgaagatgaaactctatgaacattggaaaccattaggaacagatttttcacaagcactaagt |
2592005 |
T |
|
| Q |
105 |
aggagactaagtgtgacaggcacattcaagttgataccaagaacattagccttaatagcggtacaaagacaaactgctgcgtccaaatcagccaaacctt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2592006 |
aggagactaagtgtgacaggcacattcaagttgataccaagaacattagccttaatagcggtacaaagacaaactgctgcgtccaaatcagccaaacctt |
2592105 |
T |
|
| Q |
205 |
gaatcaatgtacaacatttgcttgaagcaggacttccaacaataacattaacaagtcctaaaacatcagcacaaacacctagctttaatgtgtcactagg |
304 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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|
| T |
2592106 |
gaatcaatgtacaacacttgcttgaagcaggacttccaacaataacattaacaagtcctagaacatcagcacatacacctagctttaatgtgtcactagg |
2592205 |
T |
|
| Q |
305 |
gcatttttgtgatgttgaaggagcaggaggactagacttaggtgttgtcgaaggtggtggagtactagccttaggtggagggctagccttaggtgttgtt |
404 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2592206 |
acatttttgtgatgttgaaggagttggaggactagacttaggtgttgtcgaaggtggtggagtactagccttaggtggagggctagccttaggtgttgta |
2592305 |
T |
|
| Q |
405 |
gaaggtggaggaggacttgttggagttggtttgcatgaaccacaagcatttgaaaatgttgaataagaaaggagagaaaataatataattagtgcactaa |
504 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2592306 |
gaaggtggtggaggacttgttggagttggtttgcatgaaccacaagcatgtgaaaatgttgaataagaaaggagagaaaataatataattagtgcactaa |
2592405 |
T |
|
| Q |
505 |
gcttgttgg |
513 |
Q |
| |
|
||||||||| |
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|
| T |
2592406 |
gcttgttgg |
2592414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 22 - 420
Target Start/End: Original strand, 2599683 - 2600072
Alignment:
| Q |
22 |
gtatggcttgaacctttcacatgaagatgaaaccctacgaacattggaaaccattaggaacagatttttgacaagcactaagtaggagactaagtgtgac |
121 |
Q |
| |
|
||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2599683 |
gtatggcttgaacctttcacatgaa------actctatgaacattggaaaccattaggaacagatttttgacaagcactaagtaggagactaagtgtgac |
2599776 |
T |
|
| Q |
122 |
aggcacattcaagttgataccaagaacattagccttaatagcggtacaaagacaaactgctgcgtccaaatcagccaaaccttgaatcaatgtacaacat |
221 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2599777 |
aggcacattcaagttgataccaagaacgttagccttaatagcggtacaaagacaaactgctgcgtccaaatcagccaaaccttgaatcaatgtacaacaa |
2599876 |
T |
|
| Q |
222 |
ttgcttgaagcaggacttccaacaataacattaacaagtcctaaaacatcagcacaaacacctagctttaatgtgtcactagggcatttttgtgatgttg |
321 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
2599877 |
ttgcttgaagcaggaattccaacaataacattaacaagtcctagaacatcagcacatacacctagctttaatgtgtcactagggcatttttgtgctgttg |
2599976 |
T |
|
| Q |
322 |
aaggagcaggaggactagacttaggtgttgtcgaaggtggtggagtactagccttaggtggagggctagccttaggtgttgttgaaggtggaggaggac |
420 |
Q |
| |
|
|||||| |||||||||||||||||||||||| || ||||||||| ||||| |||||||||||||||||||||||||||| |||||||| ||||||| |
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|
| T |
2599977 |
aaggagtaggaggactagacttaggtgttgttga---tggtggagttatagccgtaggtggagggctagccttaggtgttgtagaaggtggtggaggac |
2600072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 22 - 379
Target Start/End: Original strand, 2578180 - 2578531
Alignment:
| Q |
22 |
gtatggcttgaacctttcacatgaagatgaaaccctacgaacattggaaaccattaggaacagatttttgacaagcactaagtaggagactaagtgtgac |
121 |
Q |
| |
|
||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2578180 |
gtatggcttgaacctttcacatgaa------actctatgaacattggaaaccattaggaacagatttttgacaagcactaagtaggagactaagtgtgac |
2578273 |
T |
|
| Q |
122 |
aggcacattcaagttgataccaagaacattagccttaatagcggtacaaagacaaactgctgcgtccaaatcagccaaaccttgaatcaatgtacaacat |
221 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2578274 |
aggcacattcaagttgataccaagaacgttagccttaatagcggtacaaagacaaactgctgcgtccaaatcagccaaaccttgaatcaatgtacaacag |
2578373 |
T |
|
| Q |
222 |
ttgcttgaagcaggacttccaacaataacattaacaagtcctaaaacatcagcacaaacacctagctttaatgtgtcactagggcatttttgtgatgttg |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
2578374 |
ttgcttgaagcaggacttccaacaataacattaacaagtcctagaacatcagcacatacacctagctttaatgtgtcactagggcatttttgtgctgttg |
2578473 |
T |
|
| Q |
322 |
aaggagcaggaggactagacttaggtgttgtcgaaggtggtggagtactagccttagg |
379 |
Q |
| |
|
|||||| |||||| |||| | |||| ||||| ||||| ||||||| |||||| |||| |
|
|
| T |
2578474 |
aaggagtaggagggctagccgtaggcgttgttgaaggaggtggagggctagccgtagg |
2578531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 60 - 334
Target Start/End: Original strand, 2608251 - 2608525
Alignment:
| Q |
60 |
gaacattggaaaccattaggaacagatttttgacaagcactaagtaggagactaagtgtgacaggcacattcaagttgataccaagaacattagccttaa |
159 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| |
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|
| T |
2608251 |
gaacattggaaacctgaaggaacagatttttcacaagcactaagtaggagactgagtgtgataggaacattcaagttgataccaagaacattagccttaa |
2608350 |
T |
|
| Q |
160 |
tagcggtacaaagacaaactgctgcgtccaaatcagccaaaccttgaatcaatgtacaacatttgcttgaagcaggacttccaacaataacattaacaag |
259 |
Q |
| |
|
|||| |||||||| |||| |||||| || |||||| |||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
2608351 |
tagcagtacaaaggcaaattgctgcatctaaatcaaccaaaccttgaagcaatgcacaacacttgcttgaagcaggacttccaacaataacattaacaag |
2608450 |
T |
|
| Q |
260 |
tcctaaaacatcagcacaaacacctagctttaatgtgtcactagggcatttttgtgatgttgaaggagcaggagg |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
2608451 |
tcctaaaacatcagcacaaacacctagctttaatgtgtcactaggacatttttgtgatgttgaaggagtaggagg |
2608525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 378 - 513
Target Start/End: Original strand, 2600063 - 2600198
Alignment:
| Q |
378 |
ggtggagggctagccttaggtgttgttgaaggtggaggaggacttgttggagttggtttgcatgaaccacaagcatttgaaaatgttgaataagaaagga |
477 |
Q |
| |
|
|||||||| | |||||| |||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
2600063 |
ggtggaggacaagcctttggtgtttttgaaggtggaggtggacttggtggagttggtttgcatgaaccacaagcatttgaaaatgttgaataagcaagga |
2600162 |
T |
|
| Q |
478 |
gagaaaataatataattagtgcactaagcttgttgg |
513 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2600163 |
gagaaaataatataattagtgcactatgcttgttgg |
2600198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 378 - 513
Target Start/End: Original strand, 2578698 - 2578833
Alignment:
| Q |
378 |
ggtggagggctagccttaggtgttgttgaaggtggaggaggacttgttggagttggtttgcatgaaccacaagcatttgaaaatgttgaataagaaagga |
477 |
Q |
| |
|
|||||||| | |||||| |||||| ||||||||||||||||||| |||||||||||||||||||| | ||| ||| |||||||||||||| || || || |
|
|
| T |
2578698 |
ggtggaggacaagcctttggtgtttttgaaggtggaggaggactaattggagttggtttgcatgaagcgcaatcatgtgaaaatgttgaatgagcaaaga |
2578797 |
T |
|
| Q |
478 |
gagaaaataatataattagtgcactaagcttgttgg |
513 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2578798 |
gagaaaatattataattagtgcactaagcttgttgg |
2578833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 425 - 513
Target Start/End: Original strand, 2608607 - 2608695
Alignment:
| Q |
425 |
tggagttggtttgcatgaaccacaagcatttgaaaatgttgaataagaaaggagagaaaataatataattagtgcactaagcttgttgg |
513 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
2608607 |
tggagttggtttgcatgaaccacaagcatgtgaaaatgttgaataagcaaggagagaaaacaatataattagggcactaagcttgttgg |
2608695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 354 - 397
Target Start/End: Original strand, 2578536 - 2578579
Alignment:
| Q |
354 |
gaaggtggtggagtactagccttaggtggagggctagccttagg |
397 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2578536 |
gaaggaggtggagtactagccttaggtggagggctagccgtagg |
2578579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 377 - 420
Target Start/End: Original strand, 2578664 - 2578707
Alignment:
| Q |
377 |
aggtggagggctagccttaggtgttgttgaaggtggaggaggac |
420 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
2578664 |
aggtggagggctagccttaggcgttgttgaaggtggtggaggac |
2578707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 392
Target Start/End: Original strand, 2578614 - 2578652
Alignment:
| Q |
354 |
gaaggtggtggagtactagccttaggtggagggctagcc |
392 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2578614 |
gaaggaggtggagtactagccttaggtggagggctagcc |
2578652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 62 - 309
Target Start/End: Complemental strand, 49329233 - 49328983
Alignment:
| Q |
62 |
acattggaaaccattaggaacagatttttgacaagcactaagtaggagactaagtgtgacaggcacattcaagttgataccaagaacattagccttaata |
161 |
Q |
| |
|
||||||||||||| ||| || | ||||||||| |||||||| || | || || |||| ||||||||||| |||||| ||||| || |||||||||| |
|
|
| T |
49329233 |
acattggaaaccaggagggacggttttttgacatgcactaaggagcaagctgagagtgataggcacattcaggttgatcccaagcacgttagccttaagt |
49329134 |
T |
|
| Q |
162 |
gcggtacaaagacaaactgctgcgtccaaatcagccaaaccttgaatcaatgtacaacatttgct---tgaagcaggacttccaacaataacattaacaa |
258 |
Q |
| |
|
|| || |||||||||| ||| || ||||||||||||||||| | |||||||| ||||||||| || ||||| |||| |||||| || ||||||||| | |
|
|
| T |
49329133 |
gcagtgcaaagacaaagtgcagcctccaaatcagccaaacccttaatcaatgcacaacatttactacctgaaggaggatttccaataacaacattaacca |
49329034 |
T |
|
| Q |
259 |
gtcctaaaacatcagcacaaacacctagctttaatgtgtcactagggcatt |
309 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| || || ||||||||| |
|
|
| T |
49329033 |
accctaaaagatcagcacaaacccctagctttaaggtatccttagggcatt |
49328983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 129 - 292
Target Start/End: Complemental strand, 49331442 - 49331276
Alignment:
| Q |
129 |
ttcaagttgataccaagaacattagccttaatagcggtacaaagacaaactgctgcgtccaaatcagccaaaccttgaatcaatgtacaacatttgct-- |
226 |
Q |
| |
|
|||||||| || ||||| ||||| |||||||| || || |||||||||| ||| || ||||||||||||||||||| || | || |||||| || || |
|
|
| T |
49331442 |
ttcaagtttattccaagcacattggccttaattgcagtgcaaagacaaagtgcagcatccaaatcagccaaacctttgattattgcacaacaattactac |
49331343 |
T |
|
| Q |
227 |
-tgaagcaggacttccaacaataacattaacaagtcctaaaacatcagcacaaacacctagctttaa |
292 |
Q |
| |
|
|||||||||| ||||||||| ||||||||| ||||||||||||||||||||||| |||| |||||| |
|
|
| T |
49331342 |
ctgaagcaggatttccaacaacaacattaaccagtcctaaaacatcagcacaaacccctaactttaa |
49331276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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