View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19718_low_6 (Length: 525)
Name: NF19718_low_6
Description: NF19718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19718_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 23 - 506
Target Start/End: Complemental strand, 30337831 - 30337346
Alignment:
| Q |
23 |
cagaataataaaacaattctaatttttgattaacttcttaattggctctcaaggcttacaacataaaggaaactagtaattaaatctctgaaattacagt |
122 |
Q |
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| T |
30337831 |
cagaataataaaacaattcaaatttttcattaacttcttaattggctc--aaggcttacaacataaaggaaactagtaattaaatcactgaaattacagt |
30337734 |
T |
|
| Q |
123 |
acatatctgcaatttcaggtgtcacaacaaacaagtgactttagggaattcaaacaaacaagacattataaaagaaaaaagcctttgagccaaaagtgct |
222 |
Q |
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| T |
30337733 |
acatatctggaatttcaggtgttacaacaaacaagtgactttagggaattcaaacaaacaagacattataaaagaaaaaagcctttgagccaaaagtgct |
30337634 |
T |
|
| Q |
223 |
t----atatcagaaactatcattctttttctttcctaaccagagatttatgtgtcctgacaatttgaagtttattaatcattccaaactcggcaaatgag |
318 |
Q |
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| T |
30337633 |
tgcttatatcagaaactatcattctttttctttcccaaccagagatttatgtgtcctgacaatttgaagtttattaatcattccaaactcggcaaatgag |
30337534 |
T |
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| Q |
319 |
aacgacgcctgaatgggagaaaggttatctatgaaaacgagttgttggagagttgtagggaaagtggaaagagagataatgatagggttttctcggttgt |
418 |
Q |
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| T |
30337533 |
aacgacccctgaatgggagaaaggttatctatgaaaacgagttgttggagagttgtagggaaagtggaaagagagataatgataggattttcacggttgt |
30337434 |
T |
|
| Q |
419 |
tgaagcattcacggaagatgagttttccaaggtagttgaaaggggtgaaaagagttgagttaaaggtagcattatgggagcaaggtag |
506 |
Q |
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| T |
30337433 |
tgaagcattcacggaagatgagttttccaaggtagttgaaaggggtgaaaagagttgagttaaaggtagcattatgggagcaaggtag |
30337346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 329 - 467
Target Start/End: Complemental strand, 30325886 - 30325748
Alignment:
| Q |
329 |
gaatgggagaaaggttatctatgaaaacgagttgttggagagttgtagggaaagtggaaagagagataatgatagggttttctcggttgttgaagcattc |
428 |
Q |
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||||||||||| |||| || | ||||| || |||| |||| || |||||||| ||||||||||| | || ||||||||| |||||||||||||||| |
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| T |
30325886 |
gaatgggagaagggttgtcaaagaaaataagatgttctagagatggagggaaaggggaaagagagaggttaatggggttttctgggttgttgaagcattc |
30325787 |
T |
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| Q |
429 |
acggaagatgagttttccaaggtagttgaaaggggtgaa |
467 |
Q |
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| T |
30325786 |
acggaaggtgagtaatcggaggtagttgaaaggggtgaa |
30325748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 30326004 - 30325962
Alignment:
| Q |
199 |
aaaagcctttgagccaaaagtgcttatatcagaaactatcatt |
241 |
Q |
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| T |
30326004 |
aaaagcctttgagccaaaagtgcttttatgagaaactatcatt |
30325962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 30321862 - 30321812
Alignment:
| Q |
42 |
taatttttgattaacttcttaattggctctcaaggcttacaacataaaggaaa |
94 |
Q |
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| T |
30321862 |
taatttttcattaacttcttaattgg--ctcaaggcttacaatataaaggaaa |
30321812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 30333556 - 30333492
Alignment:
| Q |
152 |
aacaagtgactttagggaattcaaacaaacaagacattataaaagaaaaaagcctttgagccaaaagt |
219 |
Q |
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||||||||||||||||| |||||||||||| |||| | ||| || ||||||||||||||||||||| |
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| T |
30333556 |
aacaagtgactttagggcattcaaacaaacgagac--tttaatag-taaaagcctttgagccaaaagt |
30333492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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