View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19718_low_9 (Length: 456)
Name: NF19718_low_9
Description: NF19718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19718_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Original strand, 39145654 - 39146083
Alignment:
| Q |
18 |
ttttggataagcaggagtgcagggctttacttggttattgagacatgggtgattgcgaaagttcacattgatagcctttaagatttttgcaacatggtca |
117 |
Q |
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| T |
39145654 |
ttttggataagcaggagtgcagggctttacttggttattgagacatgggtgattgcgaaagttcacattgatagcctttaagatttttgcaacatggtca |
39145753 |
T |
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| Q |
118 |
gggtaattgcaagaaaatgctcgcggtactatgtctctgtgcattataattgcctgcacatggcttcgcggcagaccaagcttttcaagtagagtgtcgc |
217 |
Q |
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| T |
39145754 |
gggtaattgcaagaaaatgctcgcggtactatgtctctgtgcattataattgcctgcacatggcttcgcggcagaccaagcttttcaagtagagtgtcgc |
39145853 |
T |
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| Q |
218 |
ctccacacatgatggaaggggaaccaaatgttatcacaggaagtagagaagagattggtacttcttgtcttatgaacaacatgagatttacaagtagtgc |
317 |
Q |
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| T |
39145854 |
ctccacacatgatggaaggggagccaaatgttatcacaggaagtagagaagagattggtacttcttgtcttatgaacaacatgagatttacaagtagtgc |
39145953 |
T |
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| Q |
318 |
caagcttccaccgagagaatgtccagtgaaacgaaaagttgcacgagaacctcgagattttaggtgagcatgaacttctggcaacatctgtagatatatc |
417 |
Q |
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| T |
39145954 |
caagcttccaccgagagaatgtccagtgaaacgaaaagttgcacgagaacctcgagattttaggtgagcatgaacttctggcaacatctgtagatatatc |
39146053 |
T |
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| Q |
418 |
cctttagcagcctcatatatacctctgtgc |
447 |
Q |
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| T |
39146054 |
cctttagcagcctcatatatacctctgtgc |
39146083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 43 - 443
Target Start/End: Complemental strand, 44696237 - 44695837
Alignment:
| Q |
43 |
tttacttggttattgagacatgggtgattgcgaaagttcacattgatagcctttaagatttttgcaacatggtcagggtaattgcaagaaaatgctcgcg |
142 |
Q |
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|||||||||||||| ||||| || ||| |||| || | |||| | |||||||| | || ||| ||||||| |||||| |||| ||||||||||||| |
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| T |
44696237 |
tttacttggttattaagacaaggatgactgcggaaactggcattaacagcctttagtaattctgcgacatggttagggtacgtgcatgaaaatgctcgcg |
44696138 |
T |
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| Q |
143 |
gtactatgtctctgtgcattataattgcctgcacatggcttcgcggcagaccaagcttttcaagtagagtgtcgcctccacacatgatggaaggggaacc |
242 |
Q |
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| T |
44696137 |
gtactatgtctctgtgcattgtgattccttgaacgtggctccgcggtaatcctagcttttcgagcagacgatcgcctccacacatgatggagggggagcc |
44696038 |
T |
|
| Q |
243 |
aaatgttatcacaggaagtagagaagagattggtacttcttgtcttatgaacaacatgagatttacaagtagtgccaagcttccaccgagagaatgtcca |
342 |
Q |
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||| |||||||| ||||| | |||||| || || ||||| | || || |||| ||| ||||||| ||||| |||||||||||| || |||||||| || |
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| T |
44696037 |
aaaggttatcacgggaagcaaagaagaaatcggcacttccttcctaatcaacagcataagatttataagtaatgccaagcttcctccaagagaatggcct |
44695938 |
T |
|
| Q |
343 |
gtgaaacgaaaagttgcacgagaacctcgagattttaggtgagcatgaacttctggcaacatctgtagatatatccctttagcagcctcatatatacctc |
442 |
Q |
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|||||||| |||||||| ||||||||| |||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
44695937 |
gtgaaacggaaagttgcccgagaaccttgagattttaggtgagcatgaacctctggtaacatctgctgatatgtccctttagcagcctcatatatacctc |
44695838 |
T |
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| Q |
443 |
t |
443 |
Q |
| |
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| |
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| T |
44695837 |
t |
44695837 |
T |
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