View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19719_high_1 (Length: 741)

Name: NF19719_high_1
Description: NF19719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19719_high_1
NF19719_high_1
[»] chr5 (18 HSPs)
chr5 (1-729)||(31464438-31465166)
chr5 (1-728)||(31483566-31484290)
chr5 (178-640)||(31387455-31387914)
chr5 (178-426)||(31460019-31460267)
chr5 (366-597)||(31390675-31390900)
chr5 (538-639)||(31460376-31460478)
chr5 (232-340)||(31384129-31384237)
chr5 (514-610)||(31407401-31407497)
chr5 (538-610)||(31416558-31416630)
chr5 (538-608)||(31494135-31494205)
chr5 (541-610)||(31475956-31476025)
chr5 (541-610)||(40843338-40843407)
chr5 (551-627)||(31384407-31384483)
chr5 (268-375)||(31317597-31317704)
chr5 (552-611)||(31395765-31395824)
chr5 (541-624)||(31643895-31643978)
chr5 (541-599)||(31463034-31463092)
chr5 (366-407)||(31462866-31462907)


Alignment Details
Target: chr5 (Bit Score: 713; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 713; E-Value: 0
Query Start/End: Original strand, 1 - 729
Target Start/End: Original strand, 31464438 - 31465166
Alignment:
Q  1 cttcctgttctcgttacttggattggtttggtagaaatgtctaattggatcttccacaacacttggtgctgccgtattatttgggatgaaatgcagaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31464438 cttcctgttctcgttacttggattggtttggtagaaatgtctaattggatcttccacaacacttggtgctgccgtattatttgggatgaaatgcagaatt 31464537  T
Q  101 ggatcactttctgcgccgttttgattgcctatagaaggttgatcttggattgggagtccactttcacccaagtaaacacgaaacatgatgagagaataag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31464538 ggatcactttctgcgccgttttgattgcctatagaaggttgatcttggattgggagtccactttcacccaagtaaacacgaaacatgatgagagaataag 31464637  T
Q  201 caaaacacgctccaacaacagctaaaacttttttaattttcatcagttgtaaagtgaaatatccacagaaaaaataaaggagatcaacctcaaatcccaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31464638 caaaacacgctccaacaacagctaaaacttttttaattttcatcagttgtaaagtgaaatatccacagaaaaaataaaggagatcaacctcaaatcccaa 31464737  T
Q  301 gtgagtttgctttgacatacaaagcgacatgacagcaaaagcagcagacgatataaggctatatgcatctggttttgcgttagctttatcaaagaaaaat 400  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31464738 gtgagtttgctttgacatacatagcgacatgacagcaaaagcagcagacgatataaggctatatgcatctggttttgcattagctttatcaaagaaaaat 31464837  T
Q  401 gagtaaatagtagtgattgtgaaaactgaaactgccaaatgagctctgaacctgagacttggcgatttttgccatgtgattgcatttgctaacaagtccg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31464838 gagtaaatagtagtgattgtgaaaactgaaactgccaaatgagctctgaacctgagacttggcgatttttgccatgtgattgcatttgctaacaagtccg 31464937  T
Q  501 caaggcagataacgaaactgaacagacagtacagagataccttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatag 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31464938 caaggcagataacgaaactgaacagacagtacagagataccttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatag 31465037  T
Q  601 cagtccaacaatggatgaaacaaaacacagatatctccatttctttacctgcatcttcctattcaacattttgttgaccttcgacgtcatgttgtttctc 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31465038 cagtccaacaatggatgaaacaaaacacagatatctccatttctttacctgcatcttcctattcaacattttgttgaccttcgacgtcatgttgtttctc 31465137  T
Q  701 aagcgagtaatatttgctttcatattctt 729  Q
    ||||||||||| ||||||||||| |||||    
T  31465138 aagcgagtaatgtttgctttcattttctt 31465166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 728
Target Start/End: Complemental strand, 31484290 - 31483566
Alignment:
Q  1 cttcctgttctcgttacttggattggtttggtagaaatgtctaattggatcttccacaacacttggtgctgccgtattatttgggatgaaatgcagaatt 100  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||| ||| || |||||||||||||||||||||||||||    
T  31484290 cttcttgttctcgttactaggattggtttggtagaaatgtctaattggatcttcttcaacacttgatgccgcggtattatttgggatgaaatgcagaatt 31484191  T
Q  101 ggatcactttctgcgccgttttgattgcctatagaaggttgatcttggattgggagtccactttcacccaagtaaacacgaaacatgatgagagaataag 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||  ||||| |||||||||||||||| |||||     
T  31484190 ggatcactttctgcgccgttttgattgcctatggaaggttgatcttggattgggagtccgctttcacccgggtaaaaacgaaacatgatgagaaaataac 31484091  T
Q  201 caaaacacgctccaacaacagctaaaacttttttaattttcatcagttgtaaagtgaaatatccacagaaaaaataaaggagatcaacctcaaatcccaa 300  Q
      |||| ||| ||||||||| ||||||    |||||||||||| ||| |||||||||||||| |||| |||||||| ||||||||||||||||||||||     
T  31484090 tgaaactcgcaccaacaacaactaaaaacaatttaattttcattagtagtaaagtgaaatatgcacaaaaaaaatataggagatcaacctcaaatcccag 31483991  T
Q  301 gtgagtttgctttgacatacaaagcgacatgacagcaaaagcagcagacgatataaggctatatgcatctggttttgcgttagc---tttatcaaagaaa 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||| |||||||||||| |   ||||||||||| |    
T  31483990 gtgagtttgctttgacatacaaagcgacatgacagcaaaagcagcaagcgatatcaggctatatgcatccggttttgcgttatcttttttatcaaagata 31483891  T
Q  398 aatgagtaaatagtagtgattgtgaaaactgaaactgccaaatgagctctgaacctgagacttggcgatttttgccatgtgattgcatttgctaacaagt 497  Q
     | ||||||||||| ||||||||||||||| ||| ||||||||||||||||||||| |||||||||||  |||||||| ||      ||||| | ||| |    
T  31483890 taggagtaaatagttgtgattgtgaaaactaaaaatgccaaatgagctctgaacctaagacttggcgacgtttgccatatg------tttgcaatcaaat 31483797  T
Q  498 ccgcaaggcagataacgaaactgaacagacagtacagagataccttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaaca 597  Q
    |||| | |||||||| ||||||||| | |  ||| |||  || |||||| ||| ||||||||||| ||| |||||||||||||| ||||||||||||| |    
T  31483796 ccgcgatgcagataatgaaactgaaaacagtgtaaagaattatcttcaacaaactccactttccacatatatgattgaaggaagagcttagagcgtaaaa 31483697  T
Q  598 tagcagtccaacaatggatgaaacaaaacacagatatctccatttctttacctgcatcttcctattcaacattttgttgaccttcgacgtcatgttgttt 697  Q
     || ||||||| |||||||||||||||||||| | |||||||| || ||| ||||||||||||| ||||||||| ||||| ||| || |||| |||||||    
T  31483696 gagtagtccaataatggatgaaacaaaacacacaaatctccatatcattagctgcatcttcctactcaacatttggttgagcttggaagtcacgttgttt 31483597  T
Q  698 ctcaagcgagtaatatttgctttcatattct 728  Q
    |||||||||| ||| ||||||||||| ||||    
T  31483596 ctcaagcgagcaatgtttgctttcattttct 31483566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 178 - 640
Target Start/End: Original strand, 31387455 - 31387914
Alignment:
Q  178 acgaaacatgatgagagaataagcaaaacacgctccaacaacagctaaaacttttttaattttcatcagttgtaaagtgaaatatccacagaaaaaataa 277  Q
    |||||| |||||||| ||||||   |||| |||||||||||   ||||||||  ||| || ||||||||||||||||| |||||||| || ||||||||     
T  31387455 acgaaaaatgatgagggaataactgaaactcgctccaacaattactaaaactaattttatcttcatcagttgtaaagttaaatatccgcaaaaaaaatat 31387554  T
Q  278 aggagatcaacctcaaatcccaagtgagtttgctttgacatacaaagcgacatgacagcaaaagcagcagacgatataaggctatatgcatctggttttg 377  Q
    ||||||||||| || ||||| ||||||||||||||||||| ||  || |||||||  |||||||||||| | || || || || ||   ||||||||||     
T  31387555 aggagatcaacttcgaatccgaagtgagtttgctttgacaaactgagagacatgatggcaaaagcagcacaggaaatcagactgtacaaatctggttttc 31387654  T
Q  378 cgttagctttatcaaagaaaaatgagtaaatagtagtgattgtgaaaactgaaactgccaaatgagctctgaacctgagacttg---gcgatttttgcca 474  Q
    |||||||||||||||| || || ||||||| ||| |||||| ||||||| ||||   ||||||||||| | |     ||||| |    ||| ||||||||    
T  31387655 cgttagctttatcaaaaaagaaggagtaaacagtggtgattatgaaaaccgaaaacaccaaatgagctttaagtggaagactagtgttcgagttttgcca 31387754  T
Q  475 tgtgattgcatttgctaacaagtccgcaaggcagataacgaaactgaacagacagtacagagataccttcaataaattccactttccaaatagatgattg 574  Q
    | ||      ||||| ||||||   |  |||||||||||||||||||| |  |  || ||| ||||||| || || ||||| || |||||||||||| ||    
T  31387755 tttg------tttgcaaacaagatggtgaggcagataacgaaactgaaaatgctataaagaaataccttaaaaaagttccagttcccaaatagatgagtg 31387848  T
Q  575 aaggaagggcttagagcgtaacatagcagtccaacaatggatgaaacaaaacacagatatctccat 640  Q
    ||||||| ||| ||||| ||||| |||||||||||||  |||||||||||| ||| | ||||||||    
T  31387849 aaggaagagctaagagcataacaaagcagtccaacaacagatgaaacaaaagacacaaatctccat 31387914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 178 - 426
Target Start/End: Original strand, 31460019 - 31460267
Alignment:
Q  178 acgaaacatgatgagagaataagcaaaacacgctccaacaacagctaaaacttttttaattttcatcagttgtaaagtgaaatatccacagaaaaaataa 277  Q
    |||||| |||||||| ||||||   |||| |||||||||||   |||||||   ||| || ||||||||||||||||| |||||||| || ||||| ||     
T  31460019 acgaaaaatgatgagggaataactgaaactcgctccaacaattactaaaaccaattttatcttcatcagttgtaaagttaaatatccgcaaaaaaagtat 31460118  T
Q  278 aggagatcaacctcaaatcccaagtgagtttgctttgacatacaaagcgacatgacagcaaaagcagcagacgatataaggctatatgcatctggttttg 377  Q
    ||||||||||| || ||||| ||||||||||||||||||| ||  || |||||||| ||||||||||||   || || || || ||   ||||||||||     
T  31460119 aggagatcaacttcgaatccgaagtgagtttgctttgacaaactgagagacatgacggcaaaagcagcaccggaaattagactgtacaaatctggttttc 31460218  T
Q  378 cgttagctttatcaaagaaaaatgagtaaatagtagtgattgtgaaaac 426  Q
    |||||||||||||||| || || ||||||| ||| |||||| |||||||    
T  31460219 cgttagctttatcaaaaaagaaggagtaaacagtggtgattatgaaaac 31460267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 366 - 597
Target Start/End: Original strand, 31390675 - 31390900
Alignment:
Q  366 catctggttttgcgttagctttatcaaagaaaaatgagtaaatagtagtgattgtgaaaactgaaactgccaaatgagctctgaacctgagacttggcga 465  Q
    ||||||||||| |||||||||||||||||||||| |||||||  || || ||||||||||  || | | ||||||||||||| | |||||||||||| ||    
T  31390675 catctggttttccgttagctttatcaaagaaaaaggagtaaactgttgttattgtgaaaatagagaataccaaatgagctctaagcctgagacttggtga 31390774  T
Q  466 tttttgccatgtgattgcatttgctaacaagtccgcaaggcagataacgaaactgaacagacagtacagagataccttcaataaattccactttccaaat 565  Q
     ||||||||| ||      ||||| || |||   |||||||| |||| ||||||||| | |  ||||||| | | ||| || || ||||| |||||||||    
T  31390775 gttttgccatttg------tttgcaaaaaagatggcaaggcaaataatgaaactgaaaacagtgtacagaaaaatctttaacaagttccagtttccaaat 31390868  T
Q  566 agatgattgaaggaagggcttagagcgtaaca 597  Q
    ||||| ||||||||||  |||||||| |||||    
T  31390869 agatggttgaaggaagaacttagagcataaca 31390900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 538 - 639
Target Start/End: Original strand, 31460376 - 31460478
Alignment:
Q  538 taccttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagt-ccaacaatggatgaaacaaaacacagatatct 636  Q
    |||||| || || ||||| || |||||||||||||||||||||| ||| ||||| ||||| |||||| ||||||| ||||||||||||||||| | ||||    
T  31460376 taccttaaaaaagttccagttcccaaatagatgattgaaggaagagctaagagcataacaaagcagtgccaacaacggatgaaacaaaacacacacatct 31460475  T
Q  637 cca 639  Q
    |||    
T  31460476 cca 31460478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 232 - 340
Target Start/End: Original strand, 31384129 - 31384237
Alignment:
Q  232 tttaattttcatcagttgtaaagtgaaatatccacagaaaaaataaaggagatcaacctcaaatcccaagtgagtttgctttgacatacaaagcgacatg 331  Q
    |||||| ||||| || |||||||| ||| |||| ||||||||||| | |||||||||||||||| | ||||||||||| ||||||| || |||  |||||    
T  31384129 tttaatcttcatgagctgtaaagttaaacatccgcagaaaaaatataagagatcaacctcaaattcgaagtgagtttgttttgacaaaccaagatacatg 31384228  T
Q  332 acagcaaaa 340  Q
    | |||||||    
T  31384229 atagcaaaa 31384237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 514 - 610
Target Start/End: Original strand, 31407401 - 31407497
Alignment:
Q  514 gaaactgaacagacagtacagagataccttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtccaaca 610  Q
    ||||||||| |||  ||| ||| ||| |||||| |||||||| |||||||||||||| |||||||||| ||| ||||| ||||| |||| |||||||    
T  31407401 gaaactgaaaagagtgtaaagaaatatcttcaacaaattccaatttccaaatagatggttgaaggaagtgctgagagcataacagagcaatccaaca 31407497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 538 - 610
Target Start/End: Original strand, 31416558 - 31416630
Alignment:
Q  538 taccttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtccaaca 610  Q
    ||||||||| |||||||| |||||||||||||| ||||| |||| ||||||||| ||||| | ||||||||||    
T  31416558 taccttcaacaaattccaatttccaaatagatggttgaaagaagagcttagagcataacaaatcagtccaaca 31416630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 538 - 608
Target Start/End: Original strand, 31494135 - 31494205
Alignment:
Q  538 taccttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtccaa 608  Q
    ||||||||| |||||||| |||||||||||||| ||||| |||| ||||||||| ||||| |||| |||||    
T  31494135 taccttcaacaaattccaatttccaaatagatggttgaacgaagagcttagagcataacaaagcaatccaa 31494205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 541 - 610
Target Start/End: Original strand, 31475956 - 31476025
Alignment:
Q  541 cttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtccaaca 610  Q
    |||||| |||||||| |||||||||||||  || ||||||| ||||||||| ||||| ||||||||||||    
T  31475956 cttcaacaaattccagtttccaaatagatagttaaaggaagagcttagagcataacaaagcagtccaaca 31476025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 541 - 610
Target Start/End: Original strand, 40843338 - 40843407
Alignment:
Q  541 cttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtccaaca 610  Q
    |||||| |||||||| |||||||||||||  |||||||||| ||||||||| ||||| | ||||||||||    
T  40843338 cttcaacaaattccaatttccaaatagatagttgaaggaagagcttagagcataacaaaccagtccaaca 40843407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 551 - 627
Target Start/End: Original strand, 31384407 - 31384483
Alignment:
Q  551 ttccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtccaacaatggatgaaacaaaaca 627  Q
    ||||| || |||||||||||||||||||||| ||| ||||| ||| | | ||| |||||||| ||||||||||||||    
T  31384407 ttccatttcccaaatagatgattgaaggaagagctaagagcataataaaacagaccaacaattgatgaaacaaaaca 31384483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 268 - 375
Target Start/End: Complemental strand, 31317704 - 31317597
Alignment:
Q  268 gaaaaaataaaggagatcaacctcaaatcccaagtgagtttgctttgacatacaaagcgacatgacagcaaaagcagcagacgatataaggctatatgca 367  Q
    |||||||||||| |||||||  ||||||||| | ||||||||| |||||| || ||| ||||| | |||||| |||||| | || || |  |||||||||    
T  31317704 gaaaaaataaagaagatcaatttcaaatccccactgagtttgccttgacaaactaagtgacataatagcaaaggcagcacatgaaattaaactatatgca 31317605  T
Q  368 tctggttt 375  Q
    ||||||||    
T  31317604 tctggttt 31317597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 552 - 611
Target Start/End: Complemental strand, 31395824 - 31395765
Alignment:
Q  552 tccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtccaacaa 611  Q
    |||| ||||||||||||||||||||||||| ||| ||||| ||||| |  ||||||||||    
T  31395824 tccagtttccaaatagatgattgaaggaagagctgagagcataacaaacaagtccaacaa 31395765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 624
Target Start/End: Original strand, 31643895 - 31643978
Alignment:
Q  541 cttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtccaacaatggatgaaacaaa 624  Q
    |||||| | |||||| | |||||||||||  |||||||||| ||| ||||| ||||| || ||||||||||| |||||| ||||    
T  31643895 cttcaacagattccaatctccaaatagatagttgaaggaagagctaagagcataacaaagtagtccaacaatagatgaagcaaa 31643978  T

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Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 599
Target Start/End: Original strand, 31463034 - 31463092
Alignment:
Q  541 cttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacata 599  Q
    |||||| || ||||| |||||||||||||| |||||||||| ||||| ||| |||||||    
T  31463034 cttcaacaagttccaatttccaaatagatggttgaaggaagagcttacagcataacata 31463092  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 366 - 407
Target Start/End: Original strand, 31462866 - 31462907
Alignment:
Q  366 catctggttttgcgttagctttatcaaagaaaaatgagtaaa 407  Q
    ||||||||||| ||||| |||||||||||||||| |||||||    
T  31462866 catctggttttccgttatctttatcaaagaaaaacgagtaaa 31462907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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