View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19719_high_5 (Length: 333)
Name: NF19719_high_5
Description: NF19719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19719_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 326
Target Start/End: Original strand, 38122335 - 38122645
Alignment:
| Q |
17 |
catgaaactgagagttatcaagaagccattagggttcttgatattatcttgagacaacatggtgctaaacagtacgtactttcataactacatgtatttt |
116 |
Q |
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| T |
38122335 |
catgaagctgagaattatcaagaagccattagggttcttgatattatcttgagacaacattctgccaaacagtgcgtgcttgcataactaaatgcatttt |
38122434 |
T |
|
| Q |
117 |
tt-atgtaatatagaataacaacagtaataatatctttgtaatatctatcgcaggggctgtctgctagtgcgccaaaatttctttcacaacgacccaaag |
215 |
Q |
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| T |
38122435 |
ttcatgtaatatagaataacaacagtaataatatcttggtattatctattgcaggggctgtctgcttgtgcgccaaaatttctttcacaacgacccaaat |
38122534 |
T |
|
| Q |
216 |
aagttcaatgatgttggaggtggtgtacttggatgtaatgggctgcattccagtttcagaaccactcaaagtgaattgtctctgaacataggtttgatct |
315 |
Q |
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| T |
38122535 |
aatttgaatgatgttggaggtggtgtacttagttgcaaagggctgcattccagctttagaaccacacaaagtggattgtctctgaacataggtttgatct |
38122634 |
T |
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| Q |
316 |
tgatgcctttg |
326 |
Q |
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| T |
38122635 |
tgatgcctttg |
38122645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 288
Target Start/End: Original strand, 38113841 - 38114118
Alignment:
| Q |
17 |
catgaaactgagagttatcaagaagccattagggttcttgatattatcttgagacaacatggtgctaaacagtacgtacttt-cat--aactacatgtat |
113 |
Q |
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| T |
38113841 |
catgaaactgagaattatcaagaagcgattagggttcttgacattatcttgaggcaacatgctgccaaacagtacgcgctttccattgttataaatgtat |
38113940 |
T |
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| Q |
114 |
ttttt--atgtaatatagaataacaacagtaataatatctttgtaat-atctatcgcaggggctgtctgctagtgcgccaaaatttctttcacaacgacc |
210 |
Q |
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| T |
38113941 |
ttttttaatttaatataaaataacaagggcactaatatctttgtaataatctactgtaggggctgtctgcttgtccgccaaaactttttccacaatgatc |
38114040 |
T |
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| Q |
211 |
caaagaagttcaatgatgttggaggtggtgtacttggatgtaatgggctgcattccagtttcagaaccactcaaagtg |
288 |
Q |
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| T |
38114041 |
cgaaaaatttcacagatgtaggaggtggtgttcttggatgcagagggctgcattctagcttcaggaccacacaaagtg |
38114118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 20 - 326
Target Start/End: Original strand, 14914743 - 14915049
Alignment:
| Q |
20 |
gaaactgagagttatcaagaagccattagggttcttgatattatcttgagacaacatggtgctaaacagtacgtactttcataactacatgtatttttta |
119 |
Q |
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||||| |||| ||||||||||||| | ||||||||||||| ||||||||||||||||| ||| ||||||| ||| |||||| | || ||||| |||| | |
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| T |
14914743 |
gaaaccgagaattatcaagaagccctaagggttcttgatactatcttgagacaacatgctgccaaacagtgcgtgttttcattaatatatgtaattttaa |
14914842 |
T |
|
| Q |
120 |
tgtaatatagaataacaacagtaataatatctttgtaatatctatcgcaggggctgtctgctagtgcgccaaaatttctttcacaacgacccaaagaagt |
219 |
Q |
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|||||| ||| ||||||| ||||||||||||| ||||||| ||||||| || ||| |||| |||||||||| |||||| || ||||| || | || | |
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| T |
14914843 |
cttaatatcgaacaacaacattaataatatctttttaatatccatcgcagaggatgtttgcttgtgcgccaaagtttcttccataacgatcccaggagtt |
14914942 |
T |
|
| Q |
220 |
tcaatgatgttggaggtggtgtacttggatgtaatgggctgcattccagtttcagaaccactcaaagtgaattgtctctgaacataggtttgatcttgat |
319 |
Q |
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|||| |||| || ||||| ||||||||||| | ||| ||||||| || || |||||||| ||||||| | ||| | |||| ||||||| |||||||| |
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| T |
14914943 |
tcaagaatgtaggtggtggagtacttggatgcagagggttgcattcgagctttagaaccacacaaagtggactgtgtttgaatataggttaaatcttgat |
14915042 |
T |
|
| Q |
320 |
gcctttg |
326 |
Q |
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||||||| |
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| T |
14915043 |
gcctttg |
14915049 |
T |
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