View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19719_low_3 (Length: 456)
Name: NF19719_low_3
Description: NF19719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19719_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Complemental strand, 33296950 - 33296523
Alignment:
| Q |
18 |
aaacggatcctatacttgtcaaattatgcatttaaatttgaatgcataattttcaatcactaccaaacaataaccatgcaattttcttaagtcatatggt |
117 |
Q |
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| T |
33296950 |
aaacggatcctatacttgtcaaattatgcatttaaatttgaatgcataattttcaatcactaccaaacaataaccatggaattttcttaagtcatatggt |
33296851 |
T |
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| Q |
118 |
cctatagtaatttagtaactgcagtaaaacaagaagactaacagacaataatacatgacaatcaggcatcagcaatgtgttgctttgactttgaaaacca |
217 |
Q |
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| T |
33296850 |
cctatagtaatttagtaactgcagtaaaacaagaagactaacagacaataatacatgacaatcaggcatcagcaatgtgttgctttgactttgaaaatca |
33296751 |
T |
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| Q |
218 |
tcacaaagtcatgaagtttgaaaaagagagactgcaaagttaaatccaggtcaaccacaatcattcattggaaatactaatttttatttgagaaatttaa |
317 |
Q |
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| T |
33296750 |
tcacaaagtcatgaagtttgaaaaagagagacagcaaagttaaatccaggtcaaccacaatcattcattggaaatactaatttttatttgagaaatttga |
33296651 |
T |
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| Q |
318 |
aacctatatgtaagtttcctttgtcaaatctagggactaataatttgatgaagaaaagggaaatctaacaggaagtcaattatgtctaatcttgtgtaca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33296650 |
aacctatatgtaagtttcctttgtcaaatctagggactaataatttgatgaagaaaagggaaatctaacaggaagtcaattatgtctaatcttgtgtaca |
33296551 |
T |
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| Q |
418 |
ataaagaaaatatcatgttcatgttcat |
445 |
Q |
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| T |
33296550 |
ataaagaaaatatcatgatcatattcat |
33296523 |
T |
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