View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19719_low_5 (Length: 382)
Name: NF19719_low_5
Description: NF19719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19719_low_5 |
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| [»] scaffold0045 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 19553796 - 19553437
Alignment:
| Q |
1 |
tcaatatgtttggttacaattcgaagaaatacacaccactgtgaacaataatctctccaactagtttacattnnnnnnnn-tcatcaaacactttcccca |
99 |
Q |
| |
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|||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
19553796 |
tcaatatgcttggttacaattccaagaaatacacaccactgtaaacaataatctctccaactagtttacattaaaaaaaaatcatcaaacactttcccca |
19553697 |
T |
|
| Q |
100 |
tctctttctatcctttcg-catgtgacctttccctttcatattctacnnnnnnnncttcttcttctacatcaatatgtattgttatcatgtcaaagatgc |
198 |
Q |
| |
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||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19553696 |
tctctttctatcctttccacatgcgacctttccctttcatattctacttttttttcttcttcttctacatcaatatgtattgttatcatgtcaaagatgc |
19553597 |
T |
|
| Q |
199 |
aattaaaatagtgaaagcataaaccacttaagatgaagatgttttcaagtatcaaaacgtttctccatccatcgttttcttctgttcttccgcttctttt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
19553596 |
aattaaaatagtgaaagcataaaccacttaagatgaagatgttttcaagtatcaaaacgtttctccgtccatcgttttcttctgttcttccgcttctttt |
19553497 |
T |
|
| Q |
299 |
tcctttgcatcactgacccggtccggttcataaaaatcggcgagtcaccggttttggccgg |
359 |
Q |
| |
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|||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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|
| T |
19553496 |
tcctttccatcactgacccggtccggttca-aaaaaccggcgagtcaccggttttggccgg |
19553437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 52585672 - 52586031
Alignment:
| Q |
1 |
tcaatatgtttggttacaattcgaagaaatacacaccactgtgaacaataatctctccaactagtttacattnnnnnnnn-tcatcaaacactttcccca |
99 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
52585672 |
tcaatatgtttggttacaattccaagaaatacacaccattgtaaacaataatctctccaactagtttacattaaaaaaaaatcatcaaacactttcccca |
52585771 |
T |
|
| Q |
100 |
tctctttctatcctttc-gcatgtgacctttccctttcatattctacnnnnnnnncttcttcttctacatcaatatgtattgttatcatgtcaaagatgc |
198 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52585772 |
tctctttctatcctttccgcatgtgacctttccctttcatattctactttttt---ttcttcttctacatcaatatgtattgttatcatgtcaaagatgc |
52585868 |
T |
|
| Q |
199 |
aattaaaatagtgaaagcataaaccacttaagatgaagatgttttcaagtatcaaaacgtttctccatccatcgttttcttctgttcttccgcttctttt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
52585869 |
aattaaaatagtgaaagcataaaccacttaagatgaagatgttttcgtgtatcaaaacgtttctccgtccatcgttttcttctattcttccgcttctttt |
52585968 |
T |
|
| Q |
299 |
tcctttgcatcactgacccggtccggttcataaaaatcggcgagtcaccggttttggccgggt |
361 |
Q |
| |
|
||| || ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |
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|
| T |
52585969 |
tcccttccatcactgacccggtccggttcaaaaaaaccggcgagtcaccggttttggtcgggt |
52586031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 81 - 359
Target Start/End: Complemental strand, 50358296 - 50358017
Alignment:
| Q |
81 |
tcatcaaacactttccccatctctttctatcctttc-gcatgtgacctttccctttcatattctacnnnnnnnncttcttcttctacatcaatatgtatt |
179 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||| ||||||||||||| || |
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| T |
50358296 |
tcatcaaacaccttccccatctctttctatcctttccgcatgtgacctttccctttcacattctacttttttttcttcttcttttacatcaatatgtttt |
50358197 |
T |
|
| Q |
180 |
gttatcatgtcaaagatgcaattaaaatagtgaaagcataaaccacttaagatgaagatgttttcaagtatcaaaacgtttctccatccatcgttttctt |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | |||||||||||||| |
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| T |
50358196 |
gttatcatgtcaaagatgcaattaaaatagtgaaagcataaaccacttaagatgaagatgttttcaagtattaaaacttttctgcgtccatcgttttctt |
50358097 |
T |
|
| Q |
280 |
ctgttcttccgcttctttttcctttgcatcactgacccggtccggttcataaaaatcggcgagtcaccggttttggccgg |
359 |
Q |
| |
|
| ||||||| ||||||||||||||| |||||||||||| ||||||||| ||||| |||||| ||||||||||| ||||| |
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|
| T |
50358096 |
ccgttcttctgcttctttttcctttccatcactgacccagtccggttctgaaaaaccggcgaatcaccggtttttgccgg |
50358017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 50358556 - 50358485
Alignment:
| Q |
1 |
tcaatatgtttggttacaattcgaagaaatacacaccactgtgaacaataatctctccaactagtttacatt |
72 |
Q |
| |
|
|||||||| ||||||||||||| |||| |||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
50358556 |
tcaatatgcttggttacaattccaagagatacacaccactctaaacaataatctctccaactagtttacatt |
50358485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 38210206 - 38209852
Alignment:
| Q |
1 |
tcaatatgtttggttacaattcgaagaaatacacaccactgtgaacaataatctctccaactagtttacattnnnnnnnn--tcatcaaacactttcccc |
98 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||| |
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| T |
38210206 |
tcaatatgcttggttacaattccaagaaatacacaccactgtaaacaataatctctccaactagtttacattaaaaaaaaaatcaacaaacaccttcccc |
38210107 |
T |
|
| Q |
99 |
atctctttctatcctttc-gcatgtgacctttccctttcatattctacnnnnnnnncttcttcttctacatcaatatgtattgttatcatgtcaaagatg |
197 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
38210106 |
atctctttctatcctttccgcatgtgacctttccctttcatattctacttttttttcttcttcttctacatcaatgtgtattgttatcatgtcaaagatg |
38210007 |
T |
|
| Q |
198 |
caattaaaatagtgaaagcataaaccacttaagatgaagatgttttcaagtatcaaaacgtttctccatccatcgttttcttctgttcttccgcttcttt |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
38210006 |
caattaaaatagtgaaagcataaaccacttaagatgaagatgttttcaagtatcaaaacgtttctccgtccatcgttttcttctgttcttccgcttcttt |
38209907 |
T |
|
| Q |
298 |
ttcctttgcatcactgacccggtccggttcataaaaatcggcgagtcaccggtttt |
353 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||| | ||||||||||||||| |
|
|
| T |
38209906 |
ttcctttccatcactgacccggtccggttca-aaaaacggacgagtcaccggtttt |
38209852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 29095 - 28729
Alignment:
| Q |
1 |
tcaatatgtttggttacaattcgaagaaatacacaccactgtgaacaataatctctccaactagtttacattnnnnnnnn--tcatcaaacactttcccc |
98 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
29095 |
tcaatatgtttggttacaattccaagaaatacacaccattgtaaacaataatctctccaactagtttacattaaaaaaaaaatcatcaaacactttcccc |
28996 |
T |
|
| Q |
99 |
atctctttctatcctttc-gcatgtgacctttccctttcatattctacnnnnnnnncttcttcttct------------acatcaatatgtattgttatc |
185 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| |
|
|
| T |
28995 |
atctctttctatcctttccgcatgcgacctttccctttcatattctacttttttttcttcttcttcttcttcttcttctacatcaatatgtattattatc |
28896 |
T |
|
| Q |
186 |
atgtcaaagatgcaattaaaatagtgaaagcataaaccacttaagatgaagatgttttcaagtatcaaaacgtttctccatccatcgttttcttctgttc |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
28895 |
atgtcaaagatgcaattaaaatagtgaaagcataaaccacttaagatgaagatgttttcaagtatcaaaacgtttctccgtccatcgttttcttctgttc |
28796 |
T |
|
| Q |
286 |
ttccgcttctttttcctttgcatcactgacccggtccggttcataaaaatcggcgagtcaccggtttt |
353 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||| ||||| |||||||||||| ||||| |
|
|
| T |
28795 |
ttccgcttctttttcccttcaatcactgacccggtccggttca-aaaaaccggcgagtcaccagtttt |
28729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 154 - 358
Target Start/End: Original strand, 12340918 - 12341114
Alignment:
| Q |
154 |
cttcttcttctacatcaatatgtattgttatcatgtcaaagatgcaattaaaatagtgaaagcataaaccacttaagatgaagatgttttcaagtatcaa |
253 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||| |||||| ||||||| ||||||||| |||| |||||||||||||| || |
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|
| T |
12340918 |
cttcttcttctatatcaatatgtaatgttatcatgtcaaagatgcaactaaaatggtgaaagtataaaccac------tgaaaatgttttcaagtatgaa |
12341011 |
T |
|
| Q |
254 |
-aacgtttctccatccatcgttttcttctgttcttccgcttctttttcctttgcatcactgacccggtccggttcataaaaatcggcgagtcaccggttt |
352 |
Q |
| |
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|||||| | ||| ||||||||||| ||||| |||| ||||| ||| ||||||||||||| ||||||||| ||||| || ||||||| |||||| |
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|
| T |
12341012 |
caacgttgatgtgtccttcgttttcttccgttct---gcttattttttatttccatcactgacccgatccggttcaaaaaaaccgccgagtcatcggttt |
12341108 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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