View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19719_low_8 (Length: 333)
Name: NF19719_low_8
Description: NF19719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19719_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 32070647 - 32070608
Alignment:
| Q |
224 |
attactttaatcattttatgatttgctgctattgcatggg |
263 |
Q |
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| T |
32070647 |
attactttaatcattttatgatttgctgctattgcatggg |
32070608 |
T |
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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 32067758 - 32067708
Alignment:
| Q |
166 |
tcacacttcacgtggccaatttaaattttcacaaatctttgaaaatggttt |
216 |
Q |
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| T |
32067758 |
tcacatttcacgtggccaatttaaattttcgcaaatcattgaaaatggttt |
32067708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 32070983 - 32070921
Alignment:
| Q |
82 |
aatactaaaattattagaagggatcccggaagaaattttgtagactttgaaatcttttttgtca |
145 |
Q |
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| T |
32070983 |
aatactaaaattattagaagggattcctcaag-atttgtgtagactttgaaaacttttttgtca |
32070921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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