View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19719_low_9 (Length: 319)

Name: NF19719_low_9
Description: NF19719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19719_low_9
NF19719_low_9
[»] chr1 (1 HSPs)
chr1 (11-301)||(27733317-27733609)


Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 11 - 301
Target Start/End: Complemental strand, 27733609 - 27733317
Alignment:
Q  11 taattctttagaaacgggaaaaggtttagatgaaagatcggatgctgcaaatgatattgaggttctgttaacaggtcaaacaatttcttctttcttattg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27733609 taattctttagaaacgggaaaaggtttagatgaaagatcggatgctgcaaatgatattgaggttctattaacaggtcaaacaatttcttctttcttattg 27733510  T
Q  111 c--tattattctgcattactcacaatcatgactgatgaccaactttaatacaatttaaaggtcagaatgagaaggttgacggctcggatgatggtaccac 208  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27733509 cactattattctgcattactcacaatcatgactgatgaccaactttaatacaatttaaaggtcagaatgagaaggttgacggctcagatgatggtaccac 27733410  T
Q  209 ggtattaactgaatttcttcagggggacagttctggtagtatgtatgctgactcaactccgagtttagatgaatgcacttccgcccctgtaga 301  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27733409 ggtatcaactgaatttcttcagggggacagttctggtagtatgtatgctgactcaactccgagtttagatgaatgcacttccgcccctgtaga 27733317  T

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