View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1971_high_6 (Length: 245)
Name: NF1971_high_6
Description: NF1971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1971_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 40556793 - 40556560
Alignment:
| Q |
1 |
acaattcgtttggcttgccaatcttcaaannnnnnncctctaagtcttggacaacattgaacaaatccaatctctccttctttagaaggtgttataacat |
100 |
Q |
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| T |
40556793 |
acaattcttttggcttgccaatcttcaaatttttttcctctaagtcttggacaacattgaacaaatccaatctctccttctttagaaggtgttataacat |
40556694 |
T |
|
| Q |
101 |
tattcccagtacccttatcttttgcaccccatatatatagttcttgtagtagactaatttctttatgaacaagactccccacgacaaaattagcatgaac |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40556693 |
tattcccagtacccttatcctttgcaccccatatatatagttcttgtagtagactaatttctttatgaacaagactccccacgacaaaattagcatgaac |
40556594 |
T |
|
| Q |
201 |
ttcaatgccctaatgtcattcaatgatgatgttg |
234 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
40556593 |
ttcaatcccctaatgtcattcaatgatgatgttg |
40556560 |
T |
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