View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1971_high_8 (Length: 202)

Name: NF1971_high_8
Description: NF1971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1971_high_8
NF1971_high_8
[»] chr8 (4 HSPs)
chr8 (43-183)||(32314822-32314962)
chr8 (4-39)||(26439896-26439931)
chr8 (1-38)||(4471817-4471854)
chr8 (2-38)||(39347501-39347536)
[»] chr5 (2 HSPs)
chr5 (2-39)||(28332119-28332156)
chr5 (1-42)||(23690871-23690911)
[»] chr2 (1 HSPs)
chr2 (2-38)||(11598114-11598150)
[»] chr1 (3 HSPs)
chr1 (1-45)||(24451731-24451774)
chr1 (1-45)||(48977246-48977290)
chr1 (2-42)||(48616818-48616857)
[»] chr7 (1 HSPs)
chr7 (1-38)||(31759993-31760029)
[»] chr4 (1 HSPs)
chr4 (1-42)||(40439005-40439045)
[»] chr6 (1 HSPs)
chr6 (2-38)||(34196180-34196215)
[»] chr3 (1 HSPs)
chr3 (2-38)||(33551162-33551197)


Alignment Details
Target: chr8 (Bit Score: 92; Significance: 7e-45; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 43 - 183
Target Start/End: Complemental strand, 32314962 - 32314822
Alignment:
Q  43 tttgaggggattaaccctcttatcagggataatgaaatcataattaacttttctaccaccaaaccaannnnnnnaatacaatgctaccaatccaatttgt 142  Q
    |||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||       |||||||||||||||| ||| |||||    
T  32314962 tttgtggggattaaccctcttatcagggataatgaaatcatgatcaacttttctaccaccaaaccaatttttttaatacaatgctaccaaaccagtttgt 32314863  T
Q  143 cggggtgaagaaagtgttatttcgatgagatcttgtcttag 183  Q
    ||||||||||||||||||||||| ||||||| |||||||||    
T  32314862 cggggtgaagaaagtgttatttcaatgagatattgtcttag 32314822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 26439896 - 26439931
Alignment:
Q  4 cactcaaattttttgagtgtaccataaaatttgcca 39  Q
    |||||||||||||||||||||||||| |||||||||    
T  26439896 cactcaaattttttgagtgtaccatagaatttgcca 26439931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 4471817 - 4471854
Alignment:
Q  1 gtacactcaaattttttgagtgtaccataaaatttgcc 38  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  4471817 gtacactcaaatttttcgagtgtaccataaaaattgcc 4471854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 39347501 - 39347536
Alignment:
Q  2 tacactcaaattttttgagtgtaccataaaatttgcc 38  Q
    |||||||||||||||||| ||||||||||||||||||    
T  39347501 tacactcaaattttttga-tgtaccataaaatttgcc 39347536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 28332156 - 28332119
Alignment:
Q  2 tacactcaaattttttgagtgtaccataaaatttgcca 39  Q
    |||||||||||||||||||||||||||| |||||||||    
T  28332156 tacactcaaattttttgagtgtaccatagaatttgcca 28332119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 23690871 - 23690911
Alignment:
Q  1 gtacactcaaattttttgagtgtaccataaaatttgccatat 42  Q
    ||||||||||||||||| ||||||||||| ||||||||||||    
T  23690871 gtacactcaaatttttt-agtgtaccatagaatttgccatat 23690911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 11598150 - 11598114
Alignment:
Q  2 tacactcaaattttttgagtgtaccataaaatttgcc 38  Q
    |||||||||||||||||||||||||||| ||||||||    
T  11598150 tacactcaaattttttgagtgtaccatagaatttgcc 11598114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 24451774 - 24451731
Alignment:
Q  1 gtacactcaaattttttgagtgtaccataaaatttgccatatttt 45  Q
    |||||||||||||||| |||||||||||| |||||||||||||||    
T  24451774 gtacactcaaattttt-gagtgtaccatagaatttgccatatttt 24451731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 48977246 - 48977290
Alignment:
Q  1 gtacactcaaattttttgagtgtaccataaaatttgccatatttt 45  Q
    |||||||||||| | |||||||||||||| |||||||||||||||    
T  48977246 gtacactcaaatatattgagtgtaccatagaatttgccatatttt 48977290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 48616818 - 48616857
Alignment:
Q  2 tacactcaaattttttgagtgtaccataaaatttgccatat 42  Q
    |||||||||||||| ||||||||||||| ||||||||||||    
T  48616818 tacactcaaatttt-tgagtgtaccatagaatttgccatat 48616857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 31760029 - 31759993
Alignment:
Q  1 gtacactcaaattttttgagtgtaccataaaatttgcc 38  Q
    |||||||||||||||| |||||||||||||||||||||    
T  31760029 gtacactcaaattttt-gagtgtaccataaaatttgcc 31759993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40439005 - 40439045
Alignment:
Q  1 gtacactcaaattttttgagtgtaccataaaatttgccatat 42  Q
    ||||||||||||||| ||||||||||||| ||||||||||||    
T  40439005 gtacactcaaatttt-tgagtgtaccatagaatttgccatat 40439045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 34196180 - 34196215
Alignment:
Q  2 tacactcaaattttttgagtgtaccataaaatttgcc 38  Q
    |||||||||||||| ||||||||||||||||||||||    
T  34196180 tacactcaaatttt-tgagtgtaccataaaatttgcc 34196215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 33551197 - 33551162
Alignment:
Q  2 tacactcaaattttttgagtgtaccataaaatttgcc 38  Q
    |||||||||||||||| ||||||||||||||||||||    
T  33551197 tacactcaaatttttt-agtgtaccataaaatttgcc 33551162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University