View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1971_low_1 (Length: 536)
Name: NF1971_low_1
Description: NF1971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1971_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 14 - 285
Target Start/End: Complemental strand, 24914981 - 24914712
Alignment:
| Q |
14 |
gaagtaattattttcagattattaacagaattggtttgcattttttgtatagagtaaacaagatggcatgaggaagaaggatgatcacaatttgacaaat |
113 |
Q |
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| T |
24914981 |
gaagtaattattttcagattattaacagaattggtttgcattttttgtatagagtaaacaagatggcacgaggaagaaggatgatcacaatttgacaaat |
24914882 |
T |
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| Q |
114 |
aaaagtaaaagccaaaaggtactacttttgttcttttgatattcatattaccatacaactcttcagaatgataatacttactctatatactgataataag |
213 |
Q |
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| T |
24914881 |
aaaagtaaaagccaaaaggtactacttttgttcttttgatattcatattaccatacaactcttcagaatgatattacttactctatatactgataataag |
24914782 |
T |
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| Q |
214 |
tctgaaacaaaattgtgacttatgcttgaatatgcaaatattatatcacatatagtgtatttatcgaatgtt |
285 |
Q |
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| T |
24914781 |
tctgaaacaaaattgtgacttatgcttgaatatgcaaatattatatcac--atagtgtatttatcgaatgtt |
24914712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 433 - 536
Target Start/End: Complemental strand, 24914717 - 24914614
Alignment:
| Q |
433 |
aatgttctttgtttatatttatatacttattcagtagtgggcttagatgttttggaannnnnnncaggaaaaaattgttgatcttgcaatcaagtcgtct |
532 |
Q |
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| T |
24914717 |
aatgttttttgtttatatttatatacttgttcagtagtgggcttagatgttttggattttttttcaggaaaaaattgttgatcttgcaatcaagtcgtct |
24914618 |
T |
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| Q |
533 |
aact |
536 |
Q |
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|||| |
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| T |
24914617 |
aact |
24914614 |
T |
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