View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1971_low_2 (Length: 517)
Name: NF1971_low_2
Description: NF1971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1971_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 213 - 425
Target Start/End: Original strand, 13245727 - 13245939
Alignment:
| Q |
213 |
gatgtatttttgtgtgttctaatgtgttattactcaccttgctcaaaaggtattatctatcttaccacctaatctttgaaaatggaaagtggtcttctag |
312 |
Q |
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| T |
13245727 |
gatgtatttttgtgtgttctaatgtgttactactcaccttgctcaaatggtattatctatcttaccacctaatctttgaaaatggaaagtggtcttctag |
13245826 |
T |
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| Q |
313 |
gcaaaaatgataaatattctcctcaaaaactaatcaaccaacttaatcacaaaaggaaatttgactctcatttgaagtacaaggaacacattaaacatga |
412 |
Q |
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| T |
13245827 |
acaaaaatgataaatattctcctcaaaaactaatcaaccaacttaatcacaaaaggaaatttgactctcatttgaagtacaaggaacacattacacatga |
13245926 |
T |
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| Q |
413 |
gtgaagtaaacat |
425 |
Q |
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| T |
13245927 |
gtgaagtaaacat |
13245939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 10 - 146
Target Start/End: Original strand, 13245524 - 13245660
Alignment:
| Q |
10 |
aagaatatagcggactttagaaagttatgtcgaaaacaaattcgagattttggtaataacacttcacacattttggaatcaattaccgattaattcttat |
109 |
Q |
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| T |
13245524 |
aagaaaatagcggactttagaaagttatgtcgaaaacaaattcgagattttagtaataatactttacacattttggaatcaattacgaattaattcttat |
13245623 |
T |
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| Q |
110 |
atggtcagaggagtttggatataccatttagacacac |
146 |
Q |
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| T |
13245624 |
atggttagaggagtttggatacaccatttagacacac |
13245660 |
T |
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