View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1971_low_5 (Length: 372)
Name: NF1971_low_5
Description: NF1971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1971_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 43612284 - 43612648
Alignment:
| Q |
1 |
tgtgactctgaggcaacagatactatttcctgaagccttgaacaaggaagcctgtgttgtctgagaagtggagaagagagtaactgctgccggtggcggg |
100 |
Q |
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| T |
43612284 |
tgtgactctgaggcaacagatactatttcctgaagccttgaacaaggaagcctgtgttgtctgagaagtggagaagagagtaactgctgccggtggcggc |
43612383 |
T |
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| Q |
101 |
cgtagtatgggaaagagtgctgctgctgtgacagtggctgccaaattggaaaagctttgctggtggggaaaggatgataataatatgagtatgatgacat |
200 |
Q |
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| T |
43612384 |
cgtagtatgggaaagagtgctgttgctgtgacagtggctgccaaattggaaaagctttgctggtggggaaaggatgataataatatgagtatgatgacat |
43612483 |
T |
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| Q |
201 |
ttggatatgagaaattgagaatgaatgagagactcaaatgtgcaaaggtacgtgtatgaatgtaa----tatgtatgtatggtttccaac-------gat |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
43612484 |
ttggatatgagaaattgagaatgaatgagagactcaaatgtgcaaaggtacgtgtatgaatgtaatatgtatgtatgtatggtttccaacgggatttgat |
43612583 |
T |
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| Q |
290 |
aaatccaattaacttgaaaaatcaaactaaatatatcctttgggtatcggtttagatcaaaaccg |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43612584 |
aaatccaattaacttgaaaaatcaaactaaatatatcctttgtgtatcggtttagatcaaaaccg |
43612648 |
T |
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