View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1971_low_7 (Length: 249)

Name: NF1971_low_7
Description: NF1971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1971_low_7
NF1971_low_7
[»] chr5 (6 HSPs)
chr5 (134-235)||(36359557-36359658)
chr5 (134-235)||(34440783-34440884)
chr5 (134-188)||(38640769-38640823)
chr5 (134-188)||(43388089-43388143)
chr5 (134-188)||(8739212-8739266)
chr5 (134-188)||(16429115-16429169)
[»] chr3 (6 HSPs)
chr3 (134-235)||(48304077-48304178)
chr3 (134-188)||(8735267-8735321)
chr3 (134-188)||(9087508-9087562)
chr3 (134-188)||(44085440-44085494)
chr3 (134-188)||(45244471-45244525)
chr3 (134-188)||(45244680-45244734)
[»] chr4 (2 HSPs)
chr4 (134-232)||(50392409-50392507)
chr4 (185-235)||(46846235-46846285)
[»] chr1 (4 HSPs)
chr1 (134-235)||(38950355-38950450)
chr1 (134-188)||(43319215-43319269)
chr1 (134-188)||(43319004-43319058)
chr1 (23-63)||(1800965-1801005)
[»] scaffold0016 (1 HSPs)
scaffold0016 (135-188)||(205830-205883)
[»] chr8 (3 HSPs)
chr8 (134-188)||(7971016-7971070)
chr8 (134-188)||(24627655-24627709)
chr8 (134-186)||(41530756-41530808)
[»] chr2 (3 HSPs)
chr2 (134-188)||(25715446-25715500)
chr2 (134-188)||(9847439-9847493)
chr2 (135-188)||(9847231-9847284)


Alignment Details
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 36359658 - 36359557
Alignment:
Q  134 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattcttgtgtaaatagagcgtgtgatggctggagctaaggcagctgttgt 233  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||    
T  36359658 catggtgttgatgcaatccagattacgtaatccagacaacaccatcaccaattcttgtgtaaacagagggtgtgatggctggagctaaggcagttgttgt 36359559  T
Q  234 tg 235  Q
    ||    
T  36359558 tg 36359557  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 235
Target Start/End: Original strand, 34440783 - 34440884
Alignment:
Q  134 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattcttgtgtaaatagagcgtgtgatggctggagctaaggcagctgttgt 233  Q
    ||||||| ||||||||||  ||||||||||| |||||||  ||| ||||||||||| |||||| |||| || ||||||||||||||||||||||||||||    
T  34440783 catggtgctgatgcaatctggattacgtaattcagacagtgccagcaccaattcttatgtaaagagagggtatgatggctggagctaaggcagctgttgt 34440882  T
Q  234 tg 235  Q
    ||    
T  34440883 tg 34440884  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 38640769 - 38640823
Alignment:
Q  134 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 188  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||| ||||||||||    
T  38640769 catggtgctgatgcaatccggattacgtaatccggacagcaccaacaccaattct 38640823  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 43388143 - 43388089
Alignment:
Q  134 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 188  Q
    ||||||| ||||||||||| ||||||||||| ||||||| |||| ||||||||||    
T  43388143 catggtgctgatgcaatccggattacgtaattcagacagtaccaacaccaattct 43388089  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 8739266 - 8739212
Alignment:
Q  134 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 188  Q
    ||||||| ||||||||| | |||||||||||||| || |||||| ||||||||||    
T  8739266 catggtgctgatgcaattcggattacgtaatccaaactgcaccagcaccaattct 8739212  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 16429115 - 16429169
Alignment:
Q  134 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 188  Q
    ||||||| ||||||| | | |||||||||||||| ||||||||| ||||||||||    
T  16429115 catggtgctgatgcagttcggattacgtaatccaaacagcaccaacaccaattct 16429169  T

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Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 134 - 235
Target Start/End: Original strand, 48304077 - 48304178
Alignment:
Q  134 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattcttgtgtaaatagagcgtgtgatggctggagctaaggcagctgttgt 233  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  48304077 catggtggtgatgcaatccggattacgtaatccagacagcaccatcaccaattcttgtgtaaacagagggtgtgatggctggagctaaggcagctgttgt 48304176  T
Q  234 tg 235  Q
    ||    
T  48304177 tg 48304178  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 8735267 - 8735321
Alignment:
Q  134 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 188  Q
    ||||||||||||||||||||||||||| ||| | |||||||||| ||||||||||    
T  8735267 catggtgttgatgcaatccagattacgaaattcggacagcaccagcaccaattct 8735321  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 9087508 - 9087562
Alignment:
Q  134 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 188  Q
    ||||||||||||||||||||||||||| ||| | |||||||||| ||||||||||    
T  9087508 catggtgttgatgcaatccagattacgaaattcggacagcaccagcaccaattct 9087562  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 44085494 - 44085440
Alignment:
Q  134 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 188  Q
    ||||||| |||||||||||||||||||||||||||||| ||| | ||||||||||    
T  44085494 catggtgctgatgcaatccagattacgtaatccagacaacacaagcaccaattct 44085440  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 45244471 - 45244525
Alignment:
Q  134 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 188  Q
    ||||||| ||||||||||  ||||||||||||| |||||||| | ||||||||||    
T  45244471 catggtgctgatgcaatctggattacgtaatccggacagcacgagcaccaattct 45244525  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 45244680 - 45244734
Alignment:
Q  134 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 188  Q
    ||||||| | ||||||||| ||||||||||||| ||||  |||||||||||||||    
T  45244680 catggtgctaatgcaatccggattacgtaatccggacaataccatcaccaattct 45244734  T

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Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 134 - 232
Target Start/End: Complemental strand, 50392507 - 50392409
Alignment:
Q  134 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattcttgtgtaaatagagcgtgtgatggctggagctaaggcagctgttg 232  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||| || |||||    
T  50392507 catggtgctgatgcaatccggattacgtaatccagacagcaccatcaccaattcttgtgtaaacagagggtgtgattgctggagctaaggtagttgttg 50392409  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 46846235 - 46846285
Alignment:
Q  185 ttcttgtgtaaatagagcgtgtgatggctggagctaaggcagctgttgttg 235  Q
    |||||||| ||| |||| |||||||||||||||||||||||||||||||||    
T  46846235 ttcttgtgcaaacagagggtgtgatggctggagctaaggcagctgttgttg 46846285  T

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Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 134 - 235
Target Start/End: Original strand, 38950355 - 38950450
Alignment:
Q  134 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattcttgtgtaaatagagcgtgtgatggctggagctaaggcagctgttgt 233  Q
    ||||||||||||||||| | ||||||||||||||||||||| ||||||      ||||||||| |||| |||||||||||||||||||||||||||||||    
T  38950355 catggtgttgatgcaattcggattacgtaatccagacagcagcatcac------ttgtgtaaacagagggtgtgatggctggagctaaggcagctgttgt 38950448  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 43319269 - 43319215
Alignment:
Q  134 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 188  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||    
T  43319269 catggtgctgatgcaatccggattacgtaatccggacagcaccatcaccaattct 43319215  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 43319058 - 43319004
Alignment:
Q  134 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 188  Q
    ||||||| ||||||||||| ||||||||||||  |||| ||||| ||||||||||    
T  43319058 catggtgctgatgcaatccggattacgtaatctggacaacaccagcaccaattct 43319004  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 1800965 - 1801005
Alignment:
Q  23 cagggccgtctcaaacaattcgttggcacgattttaatctt 63  Q
    ||||||||||| ||||||||||||||| | |||||||||||    
T  1800965 cagggccgtcttaaacaattcgttggccccattttaatctt 1801005  T

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Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 205883 - 205830
Alignment:
Q  135 atggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 188  Q
    |||||||| ||||||||| |||||||||||||||||| ||||| ||||||||||    
T  205883 atggtgttaatgcaatccggattacgtaatccagacatcaccagcaccaattct 205830  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 7971070 - 7971016
Alignment:
Q  134 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 188  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||| || |||||||    
T  7971070 catggtgctgatgcaatccggattacgtaatccggacagcaccagcatcaattct 7971016  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 24627655 - 24627709
Alignment:
Q  134 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 188  Q
    ||||||| ||||||||||| ||||||||||||| |||| ||||| ||||||||||    
T  24627655 catggtgctgatgcaatccggattacgtaatccggacaacaccagcaccaattct 24627709  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 41530756 - 41530808
Alignment:
Q  134 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaatt 186  Q
    ||||||| || |||||||| ||||||||||||| |||| ||||||||||||||    
T  41530756 catggtgctgttgcaatccggattacgtaatccggacatcaccatcaccaatt 41530808  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 25715446 - 25715500
Alignment:
Q  134 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 188  Q
    ||||||| ||||||||||| ||||||||||||| |||| ||||| ||||||||||    
T  25715446 catggtgctgatgcaatccggattacgtaatccggacaacaccaacaccaattct 25715500  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 9847493 - 9847439
Alignment:
Q  134 catggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 188  Q
    ||||||| ||||||||||  ||||||||||||  |||||||||| ||||||||||    
T  9847493 catggtgctgatgcaatctggattacgtaatctggacagcaccaacaccaattct 9847439  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 9847284 - 9847231
Alignment:
Q  135 atggtgttgatgcaatccagattacgtaatccagacagcaccatcaccaattct 188  Q
    |||||| ||||||||||| ||||||||||||  |||| ||||| ||||||||||    
T  9847284 atggtgctgatgcaatccggattacgtaatctggacaacaccaacaccaattct 9847231  T

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