View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19720_high_1 (Length: 728)

Name: NF19720_high_1
Description: NF19720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19720_high_1
NF19720_high_1
[»] chr1 (2 HSPs)
chr1 (29-534)||(25273790-25274292)
chr1 (545-716)||(25274322-25274493)
[»] scaffold0236 (2 HSPs)
scaffold0236 (29-534)||(23436-23938)
scaffold0236 (545-716)||(23235-23406)
[»] chr2 (10 HSPs)
chr2 (29-280)||(43728394-43728645)
chr2 (284-531)||(43687110-43687354)
chr2 (291-531)||(43728680-43728917)
chr2 (284-531)||(43703968-43704212)
chr2 (284-531)||(43714939-43715183)
chr2 (115-271)||(43703775-43703931)
chr2 (115-271)||(43714746-43714902)
chr2 (113-271)||(43686915-43687073)
chr2 (550-622)||(43728955-43729027)
chr2 (157-212)||(43735866-43735921)
[»] chr4 (2 HSPs)
chr4 (113-274)||(2690515-2690676)
chr4 (298-395)||(2690724-2690821)


Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 29 - 534
Target Start/End: Original strand, 25273790 - 25274292
Alignment:
Q  29 aagctaaaaccttgaacagacatatcacctccaactttgaagttccagcgggatctttgagcgttatcaatataggtacagtaattatatggatagtttt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  25273790 aagctaaaaccttgaacagacatatcacctccaactttgaagttccagcgggatctttgagtgttatcaatataggtacggtaattatatggatagtttt 25273889  T
Q  129 ctatgaccgcgttcttattcctttagcatcaaagataagagggaaacaagttaagatcagtgcaaagaaaagaatgggaattggtttgtttttatctttt 228  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25273890 ctatgatcgcgttcttattcctttagcatcaaagataagagggaaaccagttaagatcagtgcaaagaaaagaatgggaattggtttgtttttatctttt 25273989  T
Q  229 ctctacttggtaaatgcagcgatttttgagactataaggagaagaaatgcaaacaatggagggttggaaatgtcggcattgtggcttacacctcaacttt 328  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  25273990 ctctactcggtaaatgcagcgatttttgagactataaggagaagaaatgcaaacaatggagtgttggaaatgtcggcattgtggcttgcacctcaacttt 25274089  T
Q  329 gtctggctggtatatctgaagcagtcaatttcataggccaaaatgagttttattacacagagtttccaagtactatgtctagtgtcgccgcttcgctttc 428  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25274090 gtctagctggtatatctgaagcagtcaatttcataggccaaaatgagttttattacacagagtttccaagtactatgtctagtgtcgccgcttcgctttc 25274189  T
Q  429 tggattgggaatggctgcaggaagcttggtatcttctttattgttcagcattgtagaaaacactacttcttcaagaggaggaaaagatgggtggatttct 528  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  25274190 tggattgggaatggctgcaggaagcttggtatcttctttattgttcagcattgtagaaaacacta---cttcaagaggaggaaaagatgggtggatttct 25274286  T
Q  529 gatgat 534  Q
    ||||||    
T  25274287 gatgat 25274292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 545 - 716
Target Start/End: Original strand, 25274322 - 25274493
Alignment:
Q  545 ttggcttatagctggaattagtgcccttaatatactctattatctaatttgcagttgggcttatggacctgcagttgaagagttaagtaaggattaatgg 644  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25274322 ttggcttatagctggaattagtgcctttaatatactctattatataatttgcagttgggcttatggacctgcagttgaagagttaagtaaggattaatgg 25274421  T
Q  645 ctttgtggagataaagatgattaagtctaaaaaattgtgtggttgatgcatttattgaacttcagacatatt 716  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25274422 ctttgtggagataaagatgattaagtctaaaaaattgtgtggttgatgcatttattgaacttcagacatatt 25274493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 29 - 534
Target Start/End: Complemental strand, 23938 - 23436
Alignment:
Q  29 aagctaaaaccttgaacagacatatcacctccaactttgaagttccagcgggatctttgagcgttatcaatataggtacagtaattatatggatagtttt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| |||  |||||||||||||||||||    
T  23938 aagctaaaaccttgaacagacatatcacctccaactttgaagttccagcgggatctttgagtgttattattatagttactttaattatatggatagtttt 23839  T
Q  129 ctatgaccgcgttcttattcctttagcatcaaagataagagggaaacaagttaagatcagtgcaaagaaaagaatgggaattggtttgtttttatctttt 228  Q
    |||||| | |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23838 ctatgatctcgttcttattcctttagcatcaaagataagagggaaaccagttaagatcggtgcaaagaaaagaatgggaattggtttgtttttatctttt 23739  T
Q  229 ctctacttggtaaatgcagcgatttttgagactataaggagaagaaatgcaaacaatggagggttggaaatgtcggcattgtggcttacacctcaacttt 328  Q
    ||| |||| ||||||||||| ||||||||||||||||||||||||||||| ||  ||||||  |||||||| ||||||||||||||| |||||||||| |    
T  23738 ctccacttagtaaatgcagcaatttttgagactataaggagaagaaatgcgaatgatggagttttggaaatttcggcattgtggcttgcacctcaactct 23639  T
Q  329 gtctggctggtatatctgaagcagtcaatttcataggccaaaatgagttttattacacagagtttccaagtactatgtctagtgtcgccgcttcgctttc 428  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23638 gtctggctggtatatctgaagcagtcaaattcataggccaaaatgagttttattacacagagtttccaagtactatgtctagtgtcgctgcttcgctttc 23539  T
Q  429 tggattgggaatggctgcaggaagcttggtatcttctttattgttcagcattgtagaaaacactacttcttcaagaggaggaaaagatgggtggatttct 528  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  23538 tggattgggaatggctgcaggaagcttggtatcttctttattgttcagcattgtagaaaacacta---cttcaagaggaggaaaagatgggtggatttct 23442  T
Q  529 gatgat 534  Q
    ||||||    
T  23441 gatgat 23436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 545 - 716
Target Start/End: Complemental strand, 23406 - 23235
Alignment:
Q  545 ttggcttatagctggaattagtgcccttaatatactctattatctaatttgcagttgggcttatggacctgcagttgaagagttaagtaaggattaatgg 644  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23406 ttggcttatagctggaattagtgcccttaatatactctattatctagtttgcagttgggcttatggacctgcagttgaagagttaagtaaggattaatgg 23307  T
Q  645 ctttgtggagataaagatgattaagtctaaaaaattgtgtggttgatgcatttattgaacttcagacatatt 716  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||| ||| |||||||||| ||| |||||    
T  23306 ctttgtggagataaagatgatgaagtctcaaaaattgtgtggttgatacatatattgaacttaagatatatt 23235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 3e-56; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 29 - 280
Target Start/End: Original strand, 43728394 - 43728645
Alignment:
Q  29 aagctaaaaccttgaacagacatatcacctccaactttgaagttccagcgggatctttgagcgttatcaatataggtacagtaattatatggatagtttt 128  Q
    |||||||| ||||  |||||||||||||||| ||||||||||| ||||| |||||||| || |||||||   ||||| || || |||||||||||||  |    
T  43728394 aagctaaatccttagacagacatatcacctcaaactttgaagtaccagcaggatcttttagtgttatcatggtaggttcaatatttatatggatagtact 43728493  T
Q  129 ctatgaccgcgttcttattcctttagcatcaaagataagagggaaacaagttaagatcagtgcaaagaaaagaatgggaattggtttgtttttatctttt 228  Q
    ||| ||||| |||||||||||| ||||||||||| |||||||||||| ||||| ||||||| |||||| ||||||||||||||| |||||||||  ||||    
T  43728494 ctacgaccgtgttcttattcctctagcatcaaagctaagagggaaaccagttaggatcagtccaaagataagaatgggaattgggttgtttttaaatttt 43728593  T
Q  229 ctctacttggtaaatgcagcgatttttgagactataaggagaagaaatgcaa 280  Q
    ||| ||||||||| ||||||   |||||||| ||||||||||| ||| ||||    
T  43728594 ctccacttggtaactgcagctgcttttgagagtataaggagaaaaaaagcaa 43728645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 284 - 531
Target Start/End: Original strand, 43687110 - 43687354
Alignment:
Q  284 atggagggttggaaatgtcggcattgtggcttacacctcaactttgtctggctggtatatctgaagcagtcaatttcataggccaaaatgagttttatta 383  Q
    |||||| |||| ||||||| ||| |||||||| |||||||||||||| ||||||||||| |||||||| ||||| | || ||||||||||||||||||||    
T  43687110 atggagtgttgaaaatgtctgcaatgtggcttgcacctcaactttgtttggctggtatagctgaagcattcaatgttattggccaaaatgagttttatta 43687209  T
Q  384 cacagagtttccaagtactatgtctagtgtcgccgcttcgctttctggattgggaatggctgcaggaagcttggtatcttctttattgttcagcattgta 483  Q
    || |||||||||||  ||||||||||||||  |  || | ||||||||||||| ||||||||| |||| |||||||||||||||  | ||||| |   |     
T  43687210 caaagagtttccaaagactatgtctagtgtttcttctgcactttctggattggcaatggctgccggaaacttggtatcttcttttgtattcagtacgatt 43687309  T
Q  484 gaaaacactacttcttcaagaggaggaaaagatgggtggatttctgat 531  Q
    ||||||||||   ||||||| |||||||| || |||||||||||||||    
T  43687310 gaaaacacta---cttcaagtggaggaaatgaagggtggatttctgat 43687354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 291 - 531
Target Start/End: Original strand, 43728680 - 43728917
Alignment:
Q  291 gttggaaatgtcggcattgtggcttacacctcaactttgtctggctggtatatctgaagcagtcaatttcataggccaaaatgagttttattacacagag 390  Q
    |||| ||||||| |||||||||||| |||||||||||||| ||| |||||||   |||||| |||||   || ||||||||||| || ||||||| ||||    
T  43728680 gttgaaaatgtctgcattgtggcttgcacctcaactttgtttgggtggtataagcgaagcattcaatgctattggccaaaatgaattctattacaaagag 43728779  T
Q  391 tttccaagtactatgtctagtgtcgccgcttcgctttctggattgggaatggctgcaggaagcttggtatcttctttattgttcagcattgtagaaaaca 490  Q
    ||||| || |||||||||||| |  | ||||| |||| ||||||||||||||||||||||| |||||||||||||||  | |||| || | ||||||||     
T  43728780 tttccgaggactatgtctagtatttctgcttccctttgtggattgggaatggctgcaggaaacttggtatcttcttttgtattcaacactatagaaaacg 43728879  T
Q  491 ctacttcttcaagaggaggaaaagatgggtggatttctgat 531  Q
     ||   |||| |||||||||||||| |||||||||||||||    
T  43728880 tta---cttcgagaggaggaaaagaagggtggatttctgat 43728917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 284 - 531
Target Start/End: Original strand, 43703968 - 43704212
Alignment:
Q  284 atggagggttggaaatgtcggcattgtggcttacacctcaactttgtctggctggtatatctgaagcagtcaatttcataggccaaaatgagttttatta 383  Q
    |||||| |||| ||||||| ||| |||||||| |||||||||||||| ||||||||||| | |||    ||||| | || ||||| ||||||||||||||    
T  43703968 atggagtgttgaaaatgtctgcaatgtggcttgcacctcaactttgtttggctggtatagcagaaatgttcaatgttattggccagaatgagttttatta 43704067  T
Q  384 cacagagtttccaagtactatgtctagtgtcgccgcttcgctttctggattgggaatggctgcaggaagcttggtatcttctttattgttcagcattgta 483  Q
    || |||||||||||  | |||||||||||| || ||||| ||||||||||||| ||||| || ||||| ||||||||| |||||| | || |||||| ||    
T  43704068 caaagagtttccaaagagtatgtctagtgttgctgcttccctttctggattggcaatgggtgtaggaaacttggtatcctctttagtattgagcattata 43704167  T
Q  484 gaaaacactacttcttcaagaggaggaaaagatgggtggatttctgat 531  Q
    |||| |||||   || |||| |||||||| || |||||| ||||||||    
T  43704168 gaaagcacta---ctccaagtggaggaaatgaagggtgggtttctgat 43704212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 284 - 531
Target Start/End: Original strand, 43714939 - 43715183
Alignment:
Q  284 atggagggttggaaatgtcggcattgtggcttacacctcaactttgtctggctggtatatctgaagcagtcaatttcataggccaaaatgagttttatta 383  Q
    |||||| |||| ||||||| ||| |||||||| |||||||||||||| ||||||||||| | |||    ||||| | || ||||| ||||||||||||||    
T  43714939 atggagtgttgaaaatgtctgcaatgtggcttgcacctcaactttgtttggctggtatagcagaaatgttcaatgttattggccagaatgagttttatta 43715038  T
Q  384 cacagagtttccaagtactatgtctagtgtcgccgcttcgctttctggattgggaatggctgcaggaagcttggtatcttctttattgttcagcattgta 483  Q
    || |||||||||||  | |||||||||||| || ||||| ||||||||||||| ||||| || ||||| ||||||||| |||||| | || |||||| ||    
T  43715039 caaagagtttccaaagagtatgtctagtgttgctgcttccctttctggattggcaatgggtgtaggaaacttggtatcctctttagtattgagcattata 43715138  T
Q  484 gaaaacactacttcttcaagaggaggaaaagatgggtggatttctgat 531  Q
    |||| |||||   || |||| |||||||| || |||||| ||||||||    
T  43715139 gaaagcacta---ctccaagtggaggaaatgaagggtgggtttctgat 43715183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 115 - 271
Target Start/End: Original strand, 43703775 - 43703931
Alignment:
Q  115 atatggatagttttctatgaccgcgttcttattcctttagcatcaaagataagagggaaacaagttaagatcagtgcaaagaaaagaatgggaattggtt 214  Q
    ||||||||| || ||||||| || ||||||||||||||||||||||||||||||||||| |  || |  |||||  |||||||||||||||||||||| |    
T  43703775 atatggataattatctatgatcgtgttcttattcctttagcatcaaagataagagggaagcccgtaattatcagcccaaagaaaagaatgggaattgggt 43703874  T
Q  215 tgtttttatcttttctctacttggtaaatgcagcgatttttgagactataaggagaa 271  Q
    |||||||   ||||||  ||||| ||| |||||| |||||||||||| |||||||||    
T  43703875 tgttttttaattttcttcacttgataactgcagcaatttttgagactgtaaggagaa 43703931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 115 - 271
Target Start/End: Original strand, 43714746 - 43714902
Alignment:
Q  115 atatggatagttttctatgaccgcgttcttattcctttagcatcaaagataagagggaaacaagttaagatcagtgcaaagaaaagaatgggaattggtt 214  Q
    ||||||||| || ||||||| || ||||||||||||||||||||||||||||||||||| |  || |  |||||  |||||||||||||||||||||| |    
T  43714746 atatggataattatctatgatcgtgttcttattcctttagcatcaaagataagagggaagcccgtaattatcagcccaaagaaaagaatgggaattgggt 43714845  T
Q  215 tgtttttatcttttctctacttggtaaatgcagcgatttttgagactataaggagaa 271  Q
    |||||||   ||||||  ||||| ||| |||||| |||||||||||| |||||||||    
T  43714846 tgttttttaattttcttcacttgataactgcagcaatttttgagactgtaaggagaa 43714902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 113 - 271
Target Start/End: Original strand, 43686915 - 43687073
Alignment:
Q  113 ttatatggatagttttctatgaccgcgttcttattcctttagcatcaaagataagagggaaacaagttaagatcagtgcaaagaaaagaatgggaattgg 212  Q
    ||||||||||| || ||||||| || ||||||||||||||||||||||||||||||||||||| ||  |  |||||| ||| || |||||||||| ||||    
T  43686915 ttatatggataattatctatgatcgtgttcttattcctttagcatcaaagataagagggaaaccagcgagtatcagtccaatgataagaatgggacttgg 43687014  T
Q  213 tttgtttttatcttttctctacttggtaaatgcagcgatttttgagactataaggagaa 271  Q
     ||||||||   ||||||  || | |||  |||||| |||||||||| |||||||||||    
T  43687015 gttgttttttaattttcttcacattgtagttgcagcaatttttgagagtataaggagaa 43687073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 550 - 622
Target Start/End: Original strand, 43728955 - 43729027
Alignment:
Q  550 ttatagctggaattagtgcccttaatatactctattatctaatttgcagttgggcttatggacctgcagttga 622  Q
    ||||||||||| ||||||| |||||| | || |||| | || ||||||||||||||||||||||| |||||||    
T  43728955 ttatagctggagttagtgctcttaatttgctgtattttttagtttgcagttgggcttatggacctacagttga 43729027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 43735866 - 43735921
Alignment:
Q  157 tcaaagataagagggaaacaagttaagatcagtgcaaagaaaagaatgggaattgg 212  Q
    |||||||||||||| ||||||||||  |||||||| || |||||||| ||||||||    
T  43735866 tcaaagataagaggaaaacaagttactatcagtgccaaaaaaagaataggaattgg 43735921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 113 - 274
Target Start/End: Original strand, 2690515 - 2690676
Alignment:
Q  113 ttatatggatagttttctatgaccgcgttcttattcctttagcatcaaagataagagggaaacaagttaagatcagtgcaaagaaaagaatgggaattgg 212  Q
    ||||||||||||   | |||||||| ||  |||||||| |||| || ||| | ||||| ||||  |||| ||| ||||| |||| |||||||||| | ||    
T  2690515 ttatatggatagcactttatgaccgtgtcgttattcctctagcctcgaagctcagaggaaaaccggttaggattagtgccaagacaagaatgggactcgg 2690614  T
Q  213 tttgtttttatcttttctctacttggtaaatgcagcgatttttgagactataaggagaagaa 274  Q
     |||||||| ||||||||| |||||||||  ||| | ||| | |||||||||||| ||||||    
T  2690615 attgtttttctcttttctccacttggtaaccgcatcaattgtcgagactataaggcgaagaa 2690676  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 395
Target Start/End: Original strand, 2690724 - 2690821
Alignment:
Q  298 atgtcggcattgtggcttacacctcaactttgtctggctggtatatctgaagcagtcaatttcataggccaaaatgagttttattacacagagtttcc 395  Q
    ||||| ||| ||||||||   |||||||||||  ||| ||| ||| |||||||| ||||| | ||||||||||||||||| || ||||| || |||||    
T  2690724 atgtctgcaatgtggctttttcctcaactttgcttgggtggaatagctgaagcattcaatgttataggccaaaatgagttctactacaccgaatttcc 2690821  T

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