View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19720_high_8 (Length: 311)
Name: NF19720_high_8
Description: NF19720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19720_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 52580303 - 52580608
Alignment:
| Q |
1 |
caaacaacatcagaaccaacacctctcaacaaaaacgccaattccatcaaaagtaaaggtccaccagaaagagatagttcatgcgaaaccatgagaacaa |
100 |
Q |
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| T |
52580303 |
caaacaacatcagaaccaacacctctcaacaaaaacgccaattccatcaaaagtaaaggtccaccagaaagagatagttcatgcgaaaccatgagaacaa |
52580402 |
T |
|
| Q |
101 |
gcttcgatttcatgaaatccaaggggcttggaccagatggtgcatttccgacggaggagggatgaatctgactctgttgtgcttcgaaggtctttgttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52580403 |
gcttcgatttcatgaaatccaaggggcttggaccagctggtgcatttccgacggaggagggatgaatctgactctgttgtgcttcgaaggtctttgttgt |
52580502 |
T |
|
| Q |
201 |
gttgcatgaatcggaattgttaggtctcatgaaaagaatcatcactgttgaaattgatatgaaagctagtaacattaacggccatcttttcttcgcctat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52580503 |
gttgcatgaatcggaattgttaggtctcatgaaaagaatcatcactgttgaaattgatatgaaagctagtaacattaacggccatcttttcttcgccaat |
52580602 |
T |
|
| Q |
301 |
gctact |
306 |
Q |
| |
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|||||| |
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| T |
52580603 |
gctact |
52580608 |
T |
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