View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19720_low_1 (Length: 712)
Name: NF19720_low_1
Description: NF19720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19720_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 13 - 530
Target Start/End: Complemental strand, 6942956 - 6942439
Alignment:
| Q |
13 |
aatatggtttccatttcaaatctctcgctgaattgaagactgatgaaaaaagaacaaattgaacacctgccttagttctcaaagtgataagaattggagg |
112 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6942956 |
aatatggtttcaatttcaaatctctcgctgaattgaagactgatgaaaaaagaacaaattttacacctgccttagttctcaaagtgataagaattggagg |
6942857 |
T |
|
| Q |
113 |
aaagatgagtagatgatgataaagnnnnnnnttcaaagttcaaagagggtaaagactgggaaatgagcataaggaacaatggtatcatagtttgttgcgt |
212 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
6942856 |
aaagatgagtagatgatgataaagaaaaaaattcaaagttcaaagagggtaaagactgggaaatgagcataaggaacaatggtatcatagtttgttgcat |
6942757 |
T |
|
| Q |
213 |
gatggcgactgggggtacggttcagggttgatgttgtaatctggacaatagtttttatacacacgttgtgcattgtaaacattactatttctctcataat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
6942756 |
gatggcgactgggggtacggttcagggttgatgttgtaatctggacaatagtgtttatacacaagttgtgcattgtaaacattactctttctctcataat |
6942657 |
T |
|
| Q |
313 |
aaaaaggaactgcagctgctctgcagtcggagacgtaggcaatattggttgaacttcattaccaaatatcatgtgttcattatttgcgtttactgtttct |
412 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
6942656 |
aaaaaggaactgcagctgctctgcagtcggagacgtaggcaatattggctgaacttcgttaccaaacatcgtgtgttcattatttgcgtttactgtttct |
6942557 |
T |
|
| Q |
413 |
ttaannnnnnnnnnnnngtaccagtttgctgttctaacatacttatgggtaacatgccatgttaacattggtagggaaaccaatgtaaaatgttacattc |
512 |
Q |
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|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6942556 |
ttaattttttgatttttgaaccagtttgctgttctaacatacttatgggtaacatgccatgttaacattggtagggaaaccaatgtaaactgttacattc |
6942457 |
T |
|
| Q |
513 |
ctcttaaatgtttttctt |
530 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
6942456 |
ctcttaaatgtttttctt |
6942439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 13 - 395
Target Start/End: Complemental strand, 6939781 - 6939399
Alignment:
| Q |
13 |
aatatggtttccatttcaaatctctcgctgaattgaagactgatgaaaaaagaacaaattgaacacctgccttagttctcaaagtgataagaattggagg |
112 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6939781 |
aatatggtttcaatttcaaatctctcgctgaattgaagactgatgaaaaaagaacaaattgaacacctgccttagttctcaaagtgataagaattggagg |
6939682 |
T |
|
| Q |
113 |
aaagatgagtagatgatgataaagnnnnnnnttcaaagttcaaagagggtaaagactgggaaatgagcataaggaacaatggtatcatagtttgttgcgt |
212 |
Q |
| |
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||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6939681 |
aaatatgagtagatgatgataaagaaaaaaattcaaagttcaaagagggtaaagactgggaatggagcataaggaacaatggtatcatagtttgttgcgt |
6939582 |
T |
|
| Q |
213 |
gatggcgactgggggtacggttcagggttgatgttgtaatctggacaatagtttttatacacacgttgtgcattgtaaacattactatttctctcataat |
312 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6939581 |
gatggcgactgggggtacggttcacggttgatgttgtaatctggacaatagtttttatacacacgttgtgcattgtaaacattactctttctctcataat |
6939482 |
T |
|
| Q |
313 |
aaaaaggaactgcagctgctctgcagtcggagacgtaggcaatattggttgaacttcattaccaaatatcatgtgttcattat |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||| |||||||||||| |
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|
| T |
6939481 |
aaaaaggaactgcagctgctctgcagtcggagacgtaggcaatattggctgaacttcgttaccaaacatcgtgtgttcattat |
6939399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 195 - 406
Target Start/End: Original strand, 6787945 - 6788160
Alignment:
| Q |
195 |
tatcatagtttgttgcgtgatggcgactgggggtacggttcagggttgatgttgtaatctggacaatagttttta----tacacacgttgtgcattgtaa |
290 |
Q |
| |
|
||||||||||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||||||| |||| |||||| |||||||||||||| |
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|
| T |
6787945 |
tatcatagtttgttgtgtaatggcgactgggggtatggttcaggggtgatgttgtaatctggacaatagtgtttaattatacacaagttgtgcattgtaa |
6788044 |
T |
|
| Q |
291 |
acattactatttctctcataataaaaaggaactgcagctgctctgcagtcggagacgtaggcaatattggttgaacttcattaccaaatatcatgtgttc |
390 |
Q |
| |
|
|| ||| | |||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||| |||||||| ||| |||||| |
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| T |
6788045 |
accttaatctttcactcataataaaaaggaactgcagcttctctgcagtcggagatgtaggcaatattggccgaacttcgttaccaaacatcgtgtgttt |
6788144 |
T |
|
| Q |
391 |
attatttgcgtttact |
406 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
6788145 |
attatttgcgtttact |
6788160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 6787746 - 6787849
Alignment:
| Q |
13 |
aatatggtttccatttcaaatctctcgctgaattgaagactgatgaaaaaagaacaaattgaacacctgccttagttctcaaagtgataagaattggagg |
112 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||| || |||||||||||||||| ||||| |||| |||| |||||||||||| ||| |
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|
| T |
6787746 |
aatatggtttcaattgcaaatctctcgctgaattgaagactgattaagcgagaacaaattgaacacttgcctatgttcccaaactgataagaattgaagg |
6787845 |
T |
|
| Q |
113 |
aaag |
116 |
Q |
| |
|
|||| |
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|
| T |
6787846 |
aaag |
6787849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 215 - 378
Target Start/End: Complemental strand, 8467207 - 8467044
Alignment:
| Q |
215 |
tggcgactgggggtacggttcagggttgatgttgtaatctggacaatagtttttatacacacgttgtgcattgtaaacattactatttctctcataataa |
314 |
Q |
| |
|
||||||| ||||||||||||| ||| ||||||||||||| | | |||| |||| | | |||||||| ||||||| || | |||| | |||||| |
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|
| T |
8467207 |
tggcgacagggggtacggttctgggatgatgttgtaatcagaattgtagtatttaagtataagttgtgcactgtaaaccctaatctttcattgataatac |
8467108 |
T |
|
| Q |
315 |
aaaggaactgcagctgctctgcagtcggagacgtaggcaatattggttgaacttcattaccaaa |
378 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
8467107 |
aaaggaactgcagcttctctacagtcggagacgtaggcaatattggccgaacttcgttaccaaa |
8467044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 516 - 590
Target Start/End: Original strand, 6788244 - 6788323
Alignment:
| Q |
516 |
ttaaatgtttttcttcgctctattgttctctaattatgttg----ttgtaatcatctctattcagt-ttacaaatcttgt |
590 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||| |||| |||||||||||| |
|
|
| T |
6788244 |
ttaaatctttttcttcgatctattgttctctaattgtgttgtaaattgtaatcatctctatccagtaatacaaatcttgt |
6788323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 308 - 393
Target Start/End: Original strand, 28362649 - 28362734
Alignment:
| Q |
308 |
ataataaaaaggaactgcagctgctctgcagtcggagacgtaggcaatattggttgaacttcattaccaaatatcatgtgttcatt |
393 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||| ||||||| ||||||| ||||| |||||||| ||| |||||||||| |
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|
| T |
28362649 |
ataatacaaaggaactgcagctgctctgcagtctgagacataggcaaaattggttaaactttgttaccaaacatcgtgtgttcatt |
28362734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 308 - 366
Target Start/End: Complemental strand, 6522163 - 6522105
Alignment:
| Q |
308 |
ataataaaaaggaactgcagctgctctgcagtcggagacgtaggcaatattggttgaac |
366 |
Q |
| |
|
|||||| ||||| ||| |||||||||||||||| |||||||||||| ||||| ||||| |
|
|
| T |
6522163 |
ataatagaaaggtactacagctgctctgcagtctgagacgtaggcacaattggctgaac |
6522105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 369
Target Start/End: Original strand, 1569745 - 1569806
Alignment:
| Q |
308 |
ataataaaaaggaactgcagctgctctgcagtcggagacgtaggcaatattggttgaacttc |
369 |
Q |
| |
|
|||||| ||| ||||||||| | || ||||||||||||||||||||| |||| |||||||| |
|
|
| T |
1569745 |
ataatacaaatgaactgcagttcctttgcagtcggagacgtaggcaaaattgtctgaacttc |
1569806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 308 - 378
Target Start/End: Original strand, 48681555 - 48681625
Alignment:
| Q |
308 |
ataataaaaaggaactgcagctgctctgcagtcggagacgtaggcaatattggttgaacttcattaccaaa |
378 |
Q |
| |
|
|||||| |||||||||||||| ||||||| ||||||||| || ||| ||||| |||||||||||||||| |
|
|
| T |
48681555 |
ataatataaaggaactgcagccactctgcattcggagacgcagacaaaattggccgaacttcattaccaaa |
48681625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 308 - 354
Target Start/End: Complemental strand, 6683750 - 6683704
Alignment:
| Q |
308 |
ataataaaaaggaactgcagctgctctgcagtcggagacgtaggcaa |
354 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
6683750 |
ataatacaaaggaactgcagctgctctgcagtcgaagatataggcaa |
6683704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 378
Target Start/End: Original strand, 33720175 - 33720249
Alignment:
| Q |
308 |
ataataaaaaggaactgcagctgctc----tgcagtcggagacgtaggcaatattggttgaacttcattaccaaa |
378 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||| |||||||| ||||| ||||||| ||| |||| |
|
|
| T |
33720175 |
ataatagaaaggaactgcagctgctcgctctgcagtcggagatgtaggcaaaattggccgaacttcgttatcaaa |
33720249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 389
Target Start/End: Original strand, 34564829 - 34564910
Alignment:
| Q |
308 |
ataataaaaaggaactgcagctgctctgcagtcggagacgtaggcaatattggttgaacttcattaccaaatatcatgtgtt |
389 |
Q |
| |
|
|||||| |||||| || || | ||||| ||||||||||||||||||| |||| ||||||| |||||||| ||| |||||| |
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|
| T |
34564829 |
ataatagaaaggacctacaccagctctacagtcggagacgtaggcaaatttggccgaacttcgttaccaaacatcgtgtgtt |
34564910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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