View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19721_high_1 (Length: 754)
Name: NF19721_high_1
Description: NF19721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19721_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 15 - 297
Target Start/End: Complemental strand, 53488015 - 53487733
Alignment:
| Q |
15 |
aaattcaacggaccaaccagtgatatgaagaagccaaatcacaactttgatgatttgaggctaaggagaatgaatgttcacagtgaacattttcaaaata |
114 |
Q |
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| T |
53488015 |
aaattcaacggaccaaccagtgatatgaagaagccaaatcacaactttgatgatttgaggctaaggagaatgaatgttcacagtgaacattttcaaaata |
53487916 |
T |
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| Q |
115 |
aaaaaccctgacaatgaagaagaggatgcaacattagaattatttcctgaaaaagatacattgaaatgatggaagatattgaggctattcnnnnnnnttc |
214 |
Q |
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| T |
53487915 |
aaaaaccctgacaataaagaagaggatgcaacattagaattatttcctgaaaaagatacattgaaatgatggaagatattgaggcttttcaaaaaaattc |
53487816 |
T |
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| Q |
215 |
ctgtctttgaatctacattaatttctggcaaaccatactcatacaagattcaaaatatttcttagagcagctttaatgacaat |
297 |
Q |
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| T |
53487815 |
ttgtctttgaatctacattaagttctggcaaaccatactcatacaagattcaaaatatttcttagagcagctttaatgacaat |
53487733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 516 - 731
Target Start/End: Complemental strand, 53485772 - 53485557
Alignment:
| Q |
516 |
aactccctttctcactattcaccagtacaaaattccttttacatggatggtcaaatgaaaaccccttgcatgactcaacttatgcatgtgttaaaaccaa |
615 |
Q |
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| T |
53485772 |
aactccctttctcactattcaccagtacaaaattccttttacatggatggtcaaatgagaacccctagcatgactcaacttatgcatgtgttaaaaccaa |
53485673 |
T |
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| Q |
616 |
catgatataaatcacgccaaactcagcgtgagttaaggcacactcattacaagtcaacgtgatttaactcacgccgagtttgtgttaggttccagaatag |
715 |
Q |
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| T |
53485672 |
catgatataaatcacgccaaacttagcgtgagttaagtcacactcattacaagtcaacgtgacttaactcacgccaagtctgtgttaggttctagaacag |
53485573 |
T |
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| Q |
716 |
cggaaatgatattttt |
731 |
Q |
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| T |
53485572 |
cagaaatgatattttt |
53485557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 413 - 499
Target Start/End: Complemental strand, 53486105 - 53486016
Alignment:
| Q |
413 |
gagagagtaaatgtttttatactgcaattataggagcgataaata-ttttccttcattcgtttaatc--ttataaatatattttattttc |
499 |
Q |
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| T |
53486105 |
gagagagtaaatgtttttatactgcaattataggagcgataaatatttttccttcattcgtttaatcttttataaatacattttcttttc |
53486016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 302 - 344
Target Start/End: Complemental strand, 53487706 - 53487664
Alignment:
| Q |
302 |
ttacatagagtccaaatatgctctagtgaaaaagtacatgaac |
344 |
Q |
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| T |
53487706 |
ttacatagagtccaaatatgctctagtgaaaaagtacatgaac |
53487664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 639 - 688
Target Start/End: Original strand, 24736162 - 24736211
Alignment:
| Q |
639 |
cagcgtgagttaaggcacactcattacaagtcaacgtgatttaactcacg |
688 |
Q |
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| T |
24736162 |
cagcgtgagttaagtcacactcattacacatcaacgtgacttaactcacg |
24736211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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