View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19721_high_11 (Length: 368)
Name: NF19721_high_11
Description: NF19721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19721_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 352
Target Start/End: Original strand, 24888005 - 24888338
Alignment:
| Q |
19 |
aattttacctttgttgctttaattgaaagnnnnnnnttcaatatatttgtttacgtcatttcatacttataagctatttcaaccaccctcttattttaac |
118 |
Q |
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| T |
24888005 |
aattttacctttgttgctttaattgaaagaaaaaaaatcaatatatttgtttacgtcatttcatacttataagctatttcaaccaccctcttattttaac |
24888104 |
T |
|
| Q |
119 |
aaacactacaaagttaatcagctaatttgtcccctatcaactataacctagtttatcagtcatacgctataagttcatccgctatttgtttgccaaagag |
218 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24888105 |
aaacactacaaagttaatcagctaatttgtcacctatcaactataacctagtttatcagtcatacgctataagttcatccgctatttgtttgccaaagag |
24888204 |
T |
|
| Q |
219 |
agccatgatgttagtatgaaagttgatgttttatttacaggtcctgcacctcggctgccttatgttttaccaaactctgatagtcgtcctgttcctgccg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24888205 |
agccatgatgttagtatgaaagttgatgttttatttacaggtcctgcacctcggctgccttatgttttaccaaactctgatagtcgtcctgttcctgccg |
24888304 |
T |
|
| Q |
319 |
atttccctccagaagatgcagaccttctcacaca |
352 |
Q |
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||||||||||||||||||||||||| |||||||| |
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| T |
24888305 |
atttccctccagaagatgcagacctcctcacaca |
24888338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 199
Target Start/End: Original strand, 43822713 - 43822800
Alignment:
| Q |
112 |
ttttaacaaacactacaaagttaatcagctaatttgtcccctatcaactataacctagtttatcagtcatacgctataagttcatccg |
199 |
Q |
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| T |
43822713 |
ttttaccaaacacttcaaattcaattagctagtttatccgctatcagctataagctagcttatcagtcatccgctataagctcatccg |
43822800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 18084908 - 18084842
Alignment:
| Q |
111 |
attttaacaaacactacaaagttaatcagctaatttgtcccctatcaactataacctagtttatcag |
177 |
Q |
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|||||| |||||||| |||| | |||||||||| || ||| |||||| |||||| |||||||||||| |
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| T |
18084908 |
attttaccaaacactgcaaattcaatcagctaacttatccgctatcatctataagctagtttatcag |
18084842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 21516571 - 21516467
Alignment:
| Q |
73 |
gtcatttcatacttataagctatttcaaccaccctcttattttaacaaacactacaaagttaatcagctaatttgtcccctatcaactataacctagttt |
172 |
Q |
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||||||||||| ||| ||||||||||||||| || |||||| ||||||| ||||| | ||||||||| || ||| |||||| |||||| |||| || |
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| T |
21516571 |
gtcatttcatatttaaaagctatttcaacca----ctaattttaccaaacacaacaaattcaatcagctagcttatccactatcatctataagctagctt |
21516476 |
T |
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| Q |
173 |
atcagtcat |
181 |
Q |
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|| |||||| |
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| T |
21516475 |
ataagtcat |
21516467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 30802465 - 30802531
Alignment:
| Q |
111 |
attttaacaaacactacaaagttaatcagctaatttgtcccctatcaactataacctagtttatcag |
177 |
Q |
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|||||| ||||||||||||| | ||| |||||| || ||| |||||| |||||| |||||||||||| |
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| T |
30802465 |
attttaccaaacactacaaattcaataagctaacttatccgctatcatctataagctagtttatcag |
30802531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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