View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19721_high_12 (Length: 352)

Name: NF19721_high_12
Description: NF19721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19721_high_12
NF19721_high_12
[»] chr1 (1 HSPs)
chr1 (13-324)||(5113124-5113427)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 13 - 324
Target Start/End: Complemental strand, 5113427 - 5113124
Alignment:
Q  13 aatatcattatgtgtaagcatgcatggacccacattttctggccaatccccaaatgtcatctctcatcactctaaccaacacgtacccaccgtacaattc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5113427 aatatcattatgtgtaagcatgcatggacccacattttctggccaatccccaaatgtcatctctcatcactctaaccaacacgtacccaccgtacaattc 5113328  T
Q  113 caagtgtccttttccccttctttcttacttcatgttgcctctttcttattggtcacttttcataactctttcatatacttaacctcttcatcaacttcat 212  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 | |||||    
T  5113327 caagtgtccctttccccttctttcttacttcatgttgcctctttcttattggtcacttttcataactctttcatat-----------------atttcat 5113245  T
Q  213 agacacataacataacataacat---atagccacaca-tttgacaccgtaacccccctttcaatccaac-----acactatcttcctcccctttataact 303  Q
    |||||||||||||||||||||||   ||||||||||| ||||||||||||||| |||||||||||||||     |||||||| |||||| |||||||||     
T  5113244 agacacataacataacataacataacatagccacacattttgacaccgtaacctccctttcaatccaacatactacactatcctcctcctctttataacg 5113145  T
Q  304 acccactctttctcacatcct 324  Q
    | | |||||||||||||||||    
T  5113144 aacgactctttctcacatcct 5113124  T

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