View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19721_high_13 (Length: 321)
Name: NF19721_high_13
Description: NF19721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19721_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 8 - 306
Target Start/End: Complemental strand, 40405736 - 40405431
Alignment:
| Q |
8 |
agataattctggctgggacattagctctaatctagaaacatgggttgctgataagaatttcaagataggtgatgctcttcgtaagtactttcat------ |
101 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40405736 |
agataactctggctgggacattagctctaatctagaaacatgggttgctgataagaatttcaagataggtgatgctcttcgtaagtactttcatctttca |
40405637 |
T |
|
| Q |
102 |
-tcaataattaattttctataagctattgaaatcatacatatatacttacatgttcttcaagttccaattcacataaattgaattattttttatatatga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40405636 |
ttcaataattaattttctataagctattgaaatcatacatatatacttacatgttcttcaagttccaattcacataaattgaattattttttatatatga |
40405537 |
T |
|
| Q |
201 |
accttgttatctttcttccataacatatcaaaaatcaatcattctctttgtgaccatatgtggataaattaaatcatattatgtatctatatgtgtattt |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40405536 |
accttgctatctttcttccataacatatcaaaaatcaatcattctctttgtgaccatatgtggataaattaaatcatattatgtatctatatgtgtattt |
40405437 |
T |
|
| Q |
301 |
tctttt |
306 |
Q |
| |
|
|||||| |
|
|
| T |
40405436 |
tctttt |
40405431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University