View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19721_high_16 (Length: 278)
Name: NF19721_high_16
Description: NF19721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19721_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 12 - 262
Target Start/End: Original strand, 3345936 - 3346188
Alignment:
| Q |
12 |
agagaacacaattggctttatttattgattattactttttccatttgtttgagaaatcaagtattttctttgaagagacgtcatcccacaatgattattt |
111 |
Q |
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| T |
3345936 |
agagaacacaattggttttatttattgattattactttttccatttgtttgagaaatcaagtattttctttgaagagacgtcatcccacaatgattattt |
3346035 |
T |
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| Q |
112 |
tataatggcaacaaaaaatattgtaaattaattccttccacattatctcctttatagtaacatgcatgtagtggtgcttatcatctaacgattgtttagt |
211 |
Q |
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| T |
3346036 |
tataatggcaacaaaaaatattgtaaattaattccttccacattatctcctttatagtaa----catgtagtagtgcttatcatctaacgattgtttagt |
3346131 |
T |
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| Q |
212 |
ctt---ccaaaaaacaaaatcttac---tgtttaaccatgtggttattattatccct |
262 |
Q |
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| T |
3346132 |
cttaaaaaaaaaaacaaaatcttacaattgtttaaccatgtggttattattatccct |
3346188 |
T |
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