View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19721_high_19 (Length: 243)

Name: NF19721_high_19
Description: NF19721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19721_high_19
NF19721_high_19
[»] chr2 (1 HSPs)
chr2 (165-225)||(39114654-39114714)
[»] chr5 (2 HSPs)
chr5 (29-74)||(21035294-21035339)
chr5 (29-74)||(21035359-21035404)
[»] chr6 (2 HSPs)
chr6 (29-74)||(26385757-26385802)
chr6 (29-74)||(26385822-26385867)


Alignment Details
Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 39114654 - 39114714
Alignment:
Q  165 ttggggaccgagaccagtttgtatgctgaagtgttgggagaattttcctggttatagtaat 225  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39114654 ttggggaccgagaccagttcgtatgctgaagtgttgggagaattttcctggttatagtaat 39114714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 21035339 - 21035294
Alignment:
Q  29 aaaattgatttcaaacataataaattttgattgagtgatgtcattt 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  21035339 aaaattgatttcaaacataataaattttgattgagtgatgtcattt 21035294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 21035404 - 21035359
Alignment:
Q  29 aaaattgatttcaaacataataaattttgattgagtgatgtcattt 74  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  21035404 aaaattgatttcaaacacaataaattttgattgagtgatgtcattt 21035359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 26385757 - 26385802
Alignment:
Q  29 aaaattgatttcaaacataataaattttgattgagtgatgtcattt 74  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  26385757 aaaattgatttcaaacacaataaattttgattgagtgatgtcattt 26385802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 26385822 - 26385867
Alignment:
Q  29 aaaattgatttcaaacataataaattttgattgagtgatgtcattt 74  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  26385822 aaaattgatttcaaacacaataaattttgattgagtgatgtcattt 26385867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University