View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19721_high_2 (Length: 742)
Name: NF19721_high_2
Description: NF19721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19721_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-166; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 420 - 724
Target Start/End: Original strand, 177139 - 177443
Alignment:
| Q |
420 |
tgaagaagaggaagaataacatatggtagaagttggtcaagccctcacatggtaccaactataatctgtctttgttcatgattgcagtgctttattctag |
519 |
Q |
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| T |
177139 |
tgaagaagaggaagaagaacatatggtagaagttggtcaagccctcacatggtaccaactataatctgtctttgttcatgattgcagtgctttattctag |
177238 |
T |
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| Q |
520 |
gttcttacttatgcttcatttgtgtttgaattttaatttgtgctcaaatcataaaaaataaataggattattaccagatcagaataatgaagtcaacaat |
619 |
Q |
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| T |
177239 |
gttcttacttatgcttcatttgtgtttgaattgtaatttgtgctcaaatcataaaaaataaataggattattaccagatcagaataatgaagtcaacaat |
177338 |
T |
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| Q |
620 |
acagttgactgatttagcttagagtacaagttacccttaataagcatagcttagtgtagtttacatttgatctgctgcttgctatctcatagttacattc |
719 |
Q |
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| T |
177339 |
acagttgactgatttagcttagagtacaagttacccttaataagcatagcttagtgtagtttacatttgatctgctgcttgctatctcatagttacattc |
177438 |
T |
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| Q |
720 |
tgtac |
724 |
Q |
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| T |
177439 |
tgtac |
177443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 66 - 290
Target Start/End: Original strand, 176759 - 176988
Alignment:
| Q |
66 |
tcattattaatatctttgctcgatgcttattcttttttgttct-----aannnnnnnnatgaagtgaaaataattgcagatgttgtcgcagttggatgaa |
160 |
Q |
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| T |
176759 |
tcattattaatatctttgctcgatgcttattccttttttttctttctaattcttttttatgaagtgaaaataattgcagatgttgtcgtagttggatgaa |
176858 |
T |
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| Q |
161 |
tcattagtaccattggttttgattgggatgttaacatcaaaattaagatacacttgaggatttttacttttcttcattgtccactagtgctattcttctc |
260 |
Q |
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| T |
176859 |
tcattagtaccattggttttgattgggatgttaacatcaaaattacgatacacttgaggatttttacttttcttcattgtccactagtgctattcttcta |
176958 |
T |
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| Q |
261 |
cattttcaaaaataataccccggttggttc |
290 |
Q |
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| T |
176959 |
cattttcaaaaataataccctggttggttc |
176988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 176668 - 176725
Alignment:
| Q |
14 |
ctcctgtggtgtttccgtttattatttaatttattttatgttggttctatgttcatta |
71 |
Q |
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| T |
176668 |
ctcctgtggtgtttccgtttattatttaatttattttatgttggttctatgttcatta |
176725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 332 - 392
Target Start/End: Original strand, 177083 - 177143
Alignment:
| Q |
332 |
gagttgagagattggagaagagaaccgaaagagttacaattagcaatgccaatctttgaag |
392 |
Q |
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| T |
177083 |
gagttgagagattggagaagagaactgaaagagttacgattagcaatgccaatctttgaag |
177143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 587 - 703
Target Start/End: Complemental strand, 22295156 - 22295042
Alignment:
| Q |
587 |
ttattaccagatcagaataatgaagtcaacaatacagttgactgatttagcttagagtacaagttacccttaataagcatagcttagtgtagtttacatt |
686 |
Q |
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| T |
22295156 |
ttattaccagatcacaataatcaagtcaacaattcagttgactga-atagcttagcatacaagttactcttattaa-catagcttagcttagtttacttt |
22295059 |
T |
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| Q |
687 |
tgatctgctgcttgcta |
703 |
Q |
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|||| ||||| |||||| |
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| T |
22295058 |
tgatatgctgtttgcta |
22295042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 587 - 703
Target Start/End: Original strand, 13646032 - 13646146
Alignment:
| Q |
587 |
ttattaccagatcagaataatgaagtcaacaatacagttgactgatttagcttagagtacaagttacccttaataagcatagcttagtgtagtttacatt |
686 |
Q |
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|||||||||||||| |||||| ||||||||||| ||||||||||| |||||||| |||||||||| |||| ||| |||||||||| |||||||| || |
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| T |
13646032 |
ttattaccagatcacaataatcaagtcaacaattcagttgactga-atagcttagcatacaagttactcttattaa-catagcttagcttagtttacttt |
13646129 |
T |
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| Q |
687 |
tgatctgctgcttgcta |
703 |
Q |
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|||| |||||||||||| |
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| T |
13646130 |
tgatatgctgcttgcta |
13646146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 605 - 650
Target Start/End: Complemental strand, 34695179 - 34695134
Alignment:
| Q |
605 |
aatgaagtcaacaatacagttgactgatttagcttagagtacaagt |
650 |
Q |
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| T |
34695179 |
aatgaagtcaacaatacagttgactgagttagcttacagtacaagt |
34695134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 605 - 650
Target Start/End: Complemental strand, 34717591 - 34717546
Alignment:
| Q |
605 |
aatgaagtcaacaatacagttgactgatttagcttagagtacaagt |
650 |
Q |
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| T |
34717591 |
aatgaagtcaacaatacagttgactgagttagcttacagtacaagt |
34717546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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