View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19721_high_26 (Length: 218)
Name: NF19721_high_26
Description: NF19721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19721_high_26 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 44198736 - 44198929
Alignment:
| Q |
22 |
caacacatttaatttctctccatttttgggttaagggtaagggcatcattgtcaccatgtaccccatcacctctatatatactcactttcccacaatcat |
121 |
Q |
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| T |
44198736 |
caacacatttaatttctctctatttttgggttaagggtaagggcatcattgtcaccatgtaccccatcacctctatatatactcactttcccacaatcat |
44198835 |
T |
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| Q |
122 |
gtttctcacttcatctttataaatctttctaagtttcttctatatggtactatgttttattgcaaagtaccaacaacaccatattcctagttagtac |
218 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44198836 |
gtttctcacttcatctttataaatctttctaagt---ttctatatggtactatgttttattgcaaagtaccaacaacaccatattcctagttagtac |
44198929 |
T |
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