View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19721_high_29 (Length: 205)
Name: NF19721_high_29
Description: NF19721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19721_high_29 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 4420580 - 4420386
Alignment:
| Q |
1 |
tgttatagaaatagcttatacatcagtatttatacgataagatgccaatttgtgtctgttgtaatgaatgaaatactgcaaaattaataagaactggtag |
100 |
Q |
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| T |
4420580 |
tgttatagaagtagcttatacataaatatttatacgataagatgccaatttttgtctgttgtaatgaatgaaatactgcaaaattaataagaactggtag |
4420481 |
T |
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| Q |
101 |
ttaaatgaattgagttacatggaaaattaggaatattaatgtggatgtattgattgatagaaagaatataatgaggtataacaagttatgatgat |
195 |
Q |
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| T |
4420480 |
ttaaatgaattgagttacatggaaaattaggaatattaatgtggatgtattgattgatagaaagaatataatgaggtataacaagttacgatgat |
4420386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 10616895 - 10616932
Alignment:
| Q |
3 |
ttatagaaatagcttatacatcagtatttatacgataa |
40 |
Q |
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| T |
10616895 |
ttatagaaatagcttatacataagtatttatatgataa |
10616932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 48528541 - 48528501
Alignment:
| Q |
1 |
tgttatagaaatagcttatacatcagtatttatacgataag |
41 |
Q |
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||||||||||||||||||||||| |||| ||||| |||||| |
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| T |
48528541 |
tgttatagaaatagcttatacataagtacttatatgataag |
48528501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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