View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19721_low_11 (Length: 383)

Name: NF19721_low_11
Description: NF19721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19721_low_11
NF19721_low_11
[»] chr8 (3 HSPs)
chr8 (20-124)||(25641349-25641453)
chr8 (201-280)||(25641530-25641609)
chr8 (347-383)||(25641705-25641741)
[»] chr2 (10 HSPs)
chr2 (20-124)||(31338457-31338561)
chr2 (20-124)||(31331728-31331832)
chr2 (20-123)||(30269461-30269564)
chr2 (201-280)||(31338301-31338380)
chr2 (201-280)||(30269642-30269721)
chr2 (201-280)||(31331572-31331651)
chr2 (347-383)||(31331448-31331484)
chr2 (347-383)||(31338169-31338205)
chr2 (347-383)||(30269809-30269845)
chr2 (296-331)||(30269767-30269802)
[»] chr4 (5 HSPs)
chr4 (20-123)||(8238636-8238739)
chr4 (20-123)||(53302870-53302973)
chr4 (201-280)||(8238817-8238896)
chr4 (203-280)||(53303053-53303130)
chr4 (347-383)||(8238972-8239008)
[»] chr3 (3 HSPs)
chr3 (41-124)||(7401268-7401351)
chr3 (201-280)||(7401112-7401191)
chr3 (347-383)||(7400996-7401032)
[»] chr5 (6 HSPs)
chr5 (24-117)||(37190799-37190892)
chr5 (24-117)||(5075718-5075811)
chr5 (24-117)||(7413411-7413504)
chr5 (201-268)||(5075564-5075631)
chr5 (201-268)||(7413594-7413661)
chr5 (45-89)||(5075605-5075649)
[»] chr7 (1 HSPs)
chr7 (347-383)||(4682447-4682483)


Alignment Details
Target: chr8 (Bit Score: 101; Significance: 6e-50; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 25641349 - 25641453
Alignment:
Q  20 gcaaggagatgtgaaaccaaaaatgaaaacaaatacataatcgaagatgaaatcaaatacgaaatggaagatgaaattgaatacagaaagatgaattcgt 119  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25641349 gcaaggagatgttaaaccaaaaatgaaaacaaatacataatcgaagatgaaatcaaatacgaaatggaagatgaaattgaatacagaaagatgaattcgt 25641448  T
Q  120 ataca 124  Q
    |||||    
T  25641449 ataca 25641453  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 201 - 280
Target Start/End: Original strand, 25641530 - 25641609
Alignment:
Q  201 aagatgaaattgaattcggaattgaagaattgtgaattcacctgtgattgtaatcgcacatttagctttgcggtcatgtt 280  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  25641530 aagatgaaattgaatttggaattgaagaattgtgaattcacctgtgattgtaatcgcacatttagctttgaggccatgtt 25641609  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 347 - 383
Target Start/End: Original strand, 25641705 - 25641741
Alignment:
Q  347 gtttcagtagaatatgaatgtgttttgatataaacac 383  Q
    |||||||||||||||||||||||||||||||||||||    
T  25641705 gtttcagtagaatatgaatgtgttttgatataaacac 25641741  T

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Target: chr2 (Bit Score: 101; Significance: 6e-50; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 31338561 - 31338457
Alignment:
Q  20 gcaaggagatgtgaaaccaaaaatgaaaacaaatacataatcgaagatgaaatcaaatacgaaatggaagatgaaattgaatacagaaagatgaattcgt 119  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31338561 gcaaggagatgcgaaaccaaaaatgaaaacaaatacataatcgaagatgaaatcaaatacgaaatggaagatgaaattgaatacagaaagatgaattcgt 31338462  T
Q  120 ataca 124  Q
    |||||    
T  31338461 ataca 31338457  T

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Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 31331832 - 31331728
Alignment:
Q  20 gcaaggagatgtgaaaccaaaaatgaaaacaaatacataatcgaagatgaaatcaaatacgaaatggaagatgaaattgaatacagaaagatgaattcgt 119  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31331832 gcaaggagatgcaaaaccaaaaatgaaaacaaatacataatcgaagatgaaatcaaatacgaaatggaagatgaaattgaatacagaaagatgaattcgt 31331733  T
Q  120 ataca 124  Q
    |||||    
T  31331732 ataca 31331728  T

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Target: chr2; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 30269461 - 30269564
Alignment:
Q  20 gcaaggagatgtgaaaccaaaaatgaaaacaaatacataatcgaagatgaaatcaaatacgaaatggaagatgaaattgaatacagaaagatgaattcgt 119  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  30269461 gcaaggagatgcaaaaccaaaaatgaaaacaaatacataatcgaagatgaaatcaaatacgaaatggaagatgaaatggaatgcagaaagatgaattcgt 30269560  T
Q  120 atac 123  Q
    ||||    
T  30269561 atac 30269564  T

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Target: chr2; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 31338380 - 31338301
Alignment:
Q  201 aagatgaaattgaattcggaattgaagaattgtgaattcacctgtgattgtaatcgcacatttagctttgcggtcatgtt 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31338380 aagatgaaattgaattcggaattgaagaattgtgaattcacctgtgattgtaatcgcacatttagctttgcggccatgtt 31338301  T

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Target: chr2; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 201 - 280
Target Start/End: Original strand, 30269642 - 30269721
Alignment:
Q  201 aagatgaaattgaattcggaattgaagaattgtgaattcacctgtgattgtaatcgcacatttagctttgcggtcatgtt 280  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  30269642 aagatgaaattgaattcggaattgaagaactgtgaattcacctgtgattggaatcgcacatttagctttgcggccatgtt 30269721  T

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Target: chr2; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 31331651 - 31331572
Alignment:
Q  201 aagatgaaattgaattcggaattgaagaattgtgaattcacctgtgattgtaatcgcacatttagctttgcggtcatgtt 280  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  31331651 aagatgaaattgaatttggaattgaagaattgtgaattcacctgtgattgtaatcgcacatttagctttgaggccatgtt 31331572  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 347 - 383
Target Start/End: Complemental strand, 31331484 - 31331448
Alignment:
Q  347 gtttcagtagaatatgaatgtgttttgatataaacac 383  Q
    |||||||||||||||||||||||||||||||||||||    
T  31331484 gtttcagtagaatatgaatgtgttttgatataaacac 31331448  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 347 - 383
Target Start/End: Complemental strand, 31338205 - 31338169
Alignment:
Q  347 gtttcagtagaatatgaatgtgttttgatataaacac 383  Q
    |||||||||||||||||||||||||||||||||||||    
T  31338205 gtttcagtagaatatgaatgtgttttgatataaacac 31338169  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 383
Target Start/End: Original strand, 30269809 - 30269845
Alignment:
Q  347 gtttcagtagaatatgaatgtgttttgatataaacac 383  Q
    |||| ||||||||||||||||||||||||||||||||    
T  30269809 gttttagtagaatatgaatgtgttttgatataaacac 30269845  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 296 - 331
Target Start/End: Original strand, 30269767 - 30269802
Alignment:
Q  296 gagagagagtgtgtgtgtgttaaaagagttgaaatg 331  Q
    ||||||| ||||||||||||||||||||||||||||    
T  30269767 gagagagtgtgtgtgtgtgttaaaagagttgaaatg 30269802  T

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Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 8238636 - 8238739
Alignment:
Q  20 gcaaggagatgtgaaaccaaaaatgaaaacaaatacataatcgaagatgaaatcaaatacgaaatggaagatgaaattgaatacagaaagatgaattcgt 119  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8238636 gcaaggagatgcaaaaccaaaaatgaaaacaaatacataatcgaagatgaaatcaaatacgaaatggaagatgaaatggaatacagaaagatgaattcgt 8238735  T
Q  120 atac 123  Q
    ||||    
T  8238736 atac 8238739  T

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Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 53302870 - 53302973
Alignment:
Q  20 gcaaggagatgtgaaaccaaaaatgaaaacaaatacataatcgaagatgaaatcaaatacgaaatggaagatgaaattgaatacagaaagatgaattcgt 119  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  53302870 gcaaggagatgcaaaaccaaaaatgaaaacaaatacataatcgaagatgaaatcaaatacgaaatggaagatgaaatggaatacagaaagatgaattcgt 53302969  T
Q  120 atac 123  Q
    ||||    
T  53302970 atac 53302973  T

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Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 201 - 280
Target Start/End: Original strand, 8238817 - 8238896
Alignment:
Q  201 aagatgaaattgaattcggaattgaagaattgtgaattcacctgtgattgtaatcgcacatttagctttgcggtcatgtt 280  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  8238817 aagatgaaattgaattcggaattgaagaactgtgaattcacctgtgattggaatcgcacatttagctttgcggccatgtt 8238896  T

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Target: chr4; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 53303053 - 53303130
Alignment:
Q  203 gatgaaattgaattcggaattgaagaattgtgaattcacctgtgattgtaatcgcacatttagctttgcggtcatgtt 280  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  53303053 gatgaaattgaattcggaattgaagaactgtgaattcacctgtgattggaatcgcacatttagctttgcggccatgtt 53303130  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 383
Target Start/End: Original strand, 8238972 - 8239008
Alignment:
Q  347 gtttcagtagaatatgaatgtgttttgatataaacac 383  Q
    |||| ||||||||||||||||||||||||||||||||    
T  8238972 gttttagtagaatatgaatgtgttttgatataaacac 8239008  T

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Target: chr3 (Bit Score: 84; Significance: 8e-40; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 7401351 - 7401268
Alignment:
Q  41 aatgaaaacaaatacataatcgaagatgaaatcaaatacgaaatggaagatgaaattgaatacagaaagatgaattcgtataca 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7401351 aatgaaaacaaatacataatcgaagatgaaatcaaatacgaaatggaagatgaaattgaatacagaaagatgaattcgtataca 7401268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 7401191 - 7401112
Alignment:
Q  201 aagatgaaattgaattcggaattgaagaattgtgaattcacctgtgattgtaatcgcacatttagctttgcggtcatgtt 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7401191 aagatgaaattgaattcggaattgaagaattgtgaattcacctgtgattgtaatcgcacatttagctttgcggccatgtt 7401112  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 347 - 383
Target Start/End: Complemental strand, 7401032 - 7400996
Alignment:
Q  347 gtttcagtagaatatgaatgtgttttgatataaacac 383  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  7401032 gttttagtagaagatgaatgtgttttgatataaacac 7400996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 37190799 - 37190892
Alignment:
Q  24 ggagatgtgaaaccaaaaatgaaaacaaatacataatcgaagatgaaatcaaatacgaaatggaagatgaaattgaatacagaaagatgaattc 117  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||   ||||||||||||    
T  37190799 ggagatgtgaaaccaaaaatgaaaacaaatacataatcgaagctcaaatcaaatatgaaatggaagatgaaattgaatatgaaaagatgaattc 37190892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 5075811 - 5075718
Alignment:
Q  24 ggagatgtgaaaccaaaaatgaaaacaaatacataatcgaagatgaaatcaaatacgaaatggaagatgaaattgaatacagaaagatgaattc 117  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||| |||||||||   ||||||||||||    
T  5075811 ggagatgtgaaaccaaaaatgaaaacaaatacataatcaaagatcaaatcaaatatgaaatggaagatggaattgaatatgaaaagatgaattc 5075718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 7413411 - 7413504
Alignment:
Q  24 ggagatgtgaaaccaaaaatgaaaacaaatacataatcgaagatgaaatcaaatacgaaatggaagatgaaattgaatacagaaagatgaattc 117  Q
    ||||||||||||| |||||| ||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||   ||||||||||||    
T  7413411 ggagatgtgaaacgaaaaataaaaacaaatacataatcgaagatcaaatcaaatatgaaatggaagatggaattgaatatgaaaagatgaattc 7413504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 268
Target Start/End: Complemental strand, 5075631 - 5075564
Alignment:
Q  201 aagatgaaattgaattcggaattgaagaattgtgaattcacctgtgattgtaatcgcacatttagctt 268  Q
    |||||||||| |||| |||||||||||  ||| ||||||||||||||| | |||||||||||||||||    
T  5075631 aagatgaaatcgaatacggaattgaaggtttgagaattcacctgtgatcggaatcgcacatttagctt 5075564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 7413594 - 7413661
Alignment:
Q  201 aagatgaaattgaattcggaattgaagaattgtgaattcacctgtgattgtaatcgcacatttagctt 268  Q
    |||||||||| |||| |||||||||||  ||| ||||||||| ||||| | |||||||||||||||||    
T  7413594 aagatgaaatcgaatacggaattgaaggtttgagaattcaccagtgatcggaatcgcacatttagctt 7413661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 5075649 - 5075605
Alignment:
Q  45 aaaacaaatacataatcgaagatgaaatcaaatacgaaatggaag 89  Q
    |||||||||||| |||||||||||||||| |||||| ||| ||||    
T  5075649 aaaacaaatacaaaatcgaagatgaaatcgaatacggaattgaag 5075605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 347 - 383
Target Start/End: Complemental strand, 4682483 - 4682447
Alignment:
Q  347 gtttcagtagaatatgaatgtgttttgatataaacac 383  Q
    |||||||||||||||||||||||||||||||||||||    
T  4682483 gtttcagtagaatatgaatgtgttttgatataaacac 4682447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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