View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19721_low_15 (Length: 350)
Name: NF19721_low_15
Description: NF19721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19721_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 9 - 337
Target Start/End: Complemental strand, 52584904 - 52584576
Alignment:
| Q |
9 |
agaatatatactatactagcttttttgctcaaatagtttcttcagtacgtaaaaaacagtgttgattcgattcgattcgattccccctttcactcctttt |
108 |
Q |
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| T |
52584904 |
agaatatatactatactagcttttttgctcaaatagtttcttcagtacgtaaaaaacagtgttgattcgattcgattcgattccccctttcactcctttt |
52584805 |
T |
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| Q |
109 |
ctctttttccataaaaatctctcttctttcactgttctagagagatccacatcacaaaactcacatgcttcatttttccaattgagttgttcccttaagg |
208 |
Q |
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| T |
52584804 |
ctccttttccataaaaatctctcttctttcactgttctagagagatccacatcacaaaactcacatgcttcatttttccaattgagttgttcccttaagg |
52584705 |
T |
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| Q |
209 |
gacacaatacaatacaagtatagaactagtttattttttcaatcactttctctcagacnnnnnnngctagctacaattaatgatgtcaaactccatgacc |
308 |
Q |
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| T |
52584704 |
gacacaatacaatacaagtatagaactagtttatttattcaatcactttctctcagacaaaaaaagctagctacaattaatgatgtcaaactccatgacc |
52584605 |
T |
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| Q |
309 |
catcaaaatcaatttgagaaccaagaact |
337 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
52584604 |
catcaaaatcaatttgagaaccaagaact |
52584576 |
T |
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