View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19721_low_16 (Length: 346)
Name: NF19721_low_16
Description: NF19721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19721_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 26599230 - 26599558
Alignment:
| Q |
1 |
aaaagtgcagagaaaaatttgagaatctgtacaaatattacaagaagacaaaagaaggtaaagcaggaaggcatgatggtaagcattacaggttttttcg |
100 |
Q |
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| T |
26599230 |
aaaagtgcagagaaaaatttgagaatctgtacaaatattacaagaagacaaaagaaggtaaagcaggaaggcatgatggtaagcattacaggttttttcg |
26599329 |
T |
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| Q |
101 |
tcaacttgaagctttatatggtgaaaacagtaaccaaacttctctaccagaaaccaattttgtcaacaacaataatttccatttccaacaaacaagtaat |
200 |
Q |
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| T |
26599330 |
tcaacttgaagctttatatggtgaaaacagtaaccaaacttctctaccagaaaccaattttgtcaacaacaataatttccatttccaacaaacaagtaat |
26599429 |
T |
|
| Q |
201 |
agccaaaaccctcacaatgatcatagcctcagtctcactactaactcaactgactttgaaatcgatacgtcgtcgtctgatgatggcaatgatgtgaagg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26599430 |
agccaaaaccctcacaatgatcatagcctcagtctcactactaactcaactgactttgaaatcgatacgtcgtcgtctgatgatggaaatgatgtgaagg |
26599529 |
T |
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| Q |
301 |
gaaagaggaagagtagtggaagaagaagt |
329 |
Q |
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| T |
26599530 |
gaaagaggaagagtagtggaagaagaagt |
26599558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 41605373 - 41605294
Alignment:
| Q |
6 |
tgcagagaaaaatttgagaatctgtacaaatattacaagaagacaaaagaaggtaaagcaggaaggcatgatggtaagca |
85 |
Q |
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|||| |||||| ||||||||| ||||||| |||||||||||||| || ||||||||||| | || || ||||||||||| |
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| T |
41605373 |
tgcaaagaaaagtttgagaatttgtacaagtattacaagaagaccaaggaaggtaaagctagtagacaagatggtaagca |
41605294 |
T |
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