View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19721_low_27 (Length: 236)
Name: NF19721_low_27
Description: NF19721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19721_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 53488908 - 53488694
Alignment:
| Q |
7 |
atactgagacataattatacaatttgaacaattatttgaaaagagctttcttgttaactgnnnnnnnatctatatatgcttcaggaggtagaattagatg |
106 |
Q |
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| T |
53488908 |
atactgagacataattatacaatttgaacaattatttgaaaagagctttcttgttaactgtttttttatctatatatgcttcaggaggtagaattagatg |
53488809 |
T |
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| Q |
107 |
tggacagagaatgagatgggagcagcgaagactctctagtccctttgatcagccagaactcctcctagaaggtataaatccttattcagatgtttgtgtt |
206 |
Q |
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| T |
53488808 |
tggacagagaatgagatgggagcagcgaagactctctagtccctttgatcagccagaactcctcctagaaggtataaatccttattcagatgtttgtgtt |
53488709 |
T |
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| Q |
207 |
attgaatgtaaacaa |
221 |
Q |
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| T |
53488708 |
attgaatgtaaacaa |
53488694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 12 - 168
Target Start/End: Complemental strand, 53498311 - 53498146
Alignment:
| Q |
12 |
gagacataattatacaatttgaacaattatttgaaaagagctttcttgttaactgnnnnnnnatctatatatgcttcaggaggtagaattagatgt---- |
107 |
Q |
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| T |
53498311 |
gagacataattatacaatttgaacaattatttgaaaagagctttcttgttgactg-ttttttatctatatatgcttcaggatgtggaattagatgtcaaa |
53498213 |
T |
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| Q |
108 |
----ggacagagaatgagatgggagcagcgaagactctc--tagtccctttgatcagccagaactcc |
168 |
Q |
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| T |
53498212 |
agaaagacagagaatgagatgggaccagcaaagactctctgtagtccctttgatcagccagaactcc |
53498146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 16069180 - 16069117
Alignment:
| Q |
107 |
tggacagagaatgagatgggagcagcgaaga--ctctctagtccctttgatcagccagaactcc |
168 |
Q |
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|||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||| |
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| T |
16069180 |
tggacagagaatgagatgggagcagcaaagattctctgtagtccctttgatcagccagaactcc |
16069117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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