View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19721_low_32 (Length: 205)
Name: NF19721_low_32
Description: NF19721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19721_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 27105602 - 27105778
Alignment:
| Q |
18 |
cactttccttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaacaatatttcttcataactgtagtgttgtcttgattcagaaa |
117 |
Q |
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| T |
27105602 |
cactttccttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaacaatatttcttcataactgtagtgttgtcttgattcagaaa |
27105701 |
T |
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| Q |
118 |
aggtgaaaatgcaacagattcctcgttcatagggctttctggaaatggttgtttagttattgatccaataagtctct |
194 |
Q |
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| T |
27105702 |
aggtgaaaatgcaacagattccttgttcatagggctttctggaaatggttgtttagttattgatccaataagtctct |
27105778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 27098603 - 27098779
Alignment:
| Q |
18 |
cactttccttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaacaatatttcttcataactgtagtgttgtcttgattcagaaa |
117 |
Q |
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| T |
27098603 |
cactttccttcatcaagctcaacttaagccttgttatcatttcaccatcaatattaaaacaatattgcttcataactgtagtgttgtgttgattcagaaa |
27098702 |
T |
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| Q |
118 |
aggtgaaaatgcaacagattcctcgttcatagggctttctggaaatggttgtttagttattgatccaataagtctct |
194 |
Q |
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| T |
27098703 |
aggtgaaaatgcaacagattccttgttcatagggctttctggaaatggttgttcagttattgatccaataagtctct |
27098779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 27062811 - 27062975
Alignment:
| Q |
21 |
tttccttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaacaatatttcttcataactgtagtgttgtcttgattcagaaaagg |
120 |
Q |
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| T |
27062811 |
tttcgttcatcaaactcaacttaagtcttgttatcgtttcgccctctactttaaaacaatattgcttaataattttagtattaggttgattcacaaaggg |
27062910 |
T |
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| Q |
121 |
tgaaaatgcaacagattcctcgttcatagggctttctggaaatggttgtttagttattgatccaa |
185 |
Q |
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| T |
27062911 |
tgaaaatgcaacagattctctgtccatggggcattgtggaaatggttgtgtagttattgttccaa |
27062975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 137
Target Start/End: Original strand, 27069889 - 27070000
Alignment:
| Q |
26 |
ttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaacaatatttcttcataactgtagtgttgtcttgattcagaaaaggtgaaa |
125 |
Q |
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| T |
27069889 |
ttcatcaaactcaacttaagtcttgttatcgtttcgccctctactttaaaagaatattgcttaataattgtagtattagtttgattcacaaagggtgaaa |
27069988 |
T |
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| Q |
126 |
atgcaacagatt |
137 |
Q |
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| T |
27069989 |
atgcaacagatt |
27070000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 27085940 - 27086002
Alignment:
| Q |
21 |
tttccttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaacaatatt |
83 |
Q |
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|||| |||||||||||||||||||| || ||| |||||||||||| || ||||||||||||| |
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| T |
27085940 |
tttcattcatcaaactcaacttaagtcttcttatcatttcaccctctactttaaaacaatatt |
27086002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 27041467 - 27041524
Alignment:
| Q |
26 |
ttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaacaatatt |
83 |
Q |
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| T |
27041467 |
ttcatcaaactcaatttaagtcctgttatcatttcaccctctactttaaaacaatatt |
27041524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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