View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19721_low_6 (Length: 507)
Name: NF19721_low_6
Description: NF19721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19721_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 17 - 483
Target Start/End: Complemental strand, 4421260 - 4420793
Alignment:
| Q |
17 |
aaaatcgtcatcaatatcactttgattaatgataaaataaaatctttacttatttggattggatagacatagcttagtttttatcaccaaattatttatt |
116 |
Q |
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| T |
4421260 |
aaaatcatcatcaatatcactttgattaatgataaaataaaatctttatttatttggattggatagacatagcttagtttttatcaccaaattatttatt |
4421161 |
T |
|
| Q |
117 |
catagtgtgatgacaaaaagtttgatcagaattcagaaatttcatcctttcttcttagttttcttacttatccacttcactgtttcagattttgcatcct |
216 |
Q |
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| T |
4421160 |
catagaatgatgacaaaaagtttgatcagaattcagaaatttcatcctttcttcttagttttcttacttatccacttcactgtttcagattttgcatcct |
4421061 |
T |
|
| Q |
217 |
gttttggtattgagtgtgattaagaggactcaaattttgcaaagtcttgaaggagagattttggttgaattccttttattcattgctgagaaaactgaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4421060 |
gttttggtattgagtgtgattaagaggactcaaattttgcaaagtcttgaaggagagattttggttgaattccttttattcattgctgagaaaactgaat |
4420961 |
T |
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| Q |
317 |
tgaagtgagaatctgtat-tctctgagtatggctgggaaacaagatcaattagagatcaaatttcggttgagcgatggatcggatattggacccaaaagt |
415 |
Q |
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| T |
4420960 |
tgaagtgagaatctgtatctctctgaatatggctgggaaacaagatcaattagagatcaaatttcggttgagcgatggatcggatattggacccaaaagt |
4420861 |
T |
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| Q |
416 |
tttgctgctgctactagtattgcaactttgaaagaaagtattcttactcaatggccaaaaggttagtt |
483 |
Q |
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| T |
4420860 |
tttgctgctgctactagtattgcaactttgaaagaaagtattcttactcaatggccaaaaggttagtt |
4420793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 350 - 483
Target Start/End: Complemental strand, 3560885 - 3560752
Alignment:
| Q |
350 |
gggaaacaagatcaattagagatcaaatttcggttgagcgatggatcggatattggacccaaaagttttgctgctgctactagtattgcaactttgaaag |
449 |
Q |
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||||| ||||| || || |||||||| ||| |||||| ||||| || ||||| || |||||||||||| |||| ||||||||||||||||| ||||||| |
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| T |
3560885 |
gggaaccaagagcagtttgagatcaagtttaggttgacggatggttctgatatcggccccaaaagttttcctgccgctactagtattgcaacattgaaag |
3560786 |
T |
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| Q |
450 |
aaagtattcttactcaatggccaaaaggttagtt |
483 |
Q |
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| T |
3560785 |
aaagtattcttgctcaatggccaaaaggttagtt |
3560752 |
T |
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