View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19721_low_7 (Length: 461)
Name: NF19721_low_7
Description: NF19721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19721_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 35071814 - 35072263
Alignment:
| Q |
1 |
tctagtctcaacacccttcatctcgcatacaacaatctcagcggaggattacctaactctctcgctggttccggaattcagagtttttggatcaataaca |
100 |
Q |
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| T |
35071814 |
tctagtctcaacacccttcatctcgcatacaacaatctcagcggaggattacctaactctctcgctggttccggaattcagagtttttggatcaataaca |
35071913 |
T |
|
| Q |
101 |
atttacctgggttaaccggttcaatcactgtgatttccaacatgacattgttaactcaggtatggcttcatgtgaataaattcaccggtccaattccaga |
200 |
Q |
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| T |
35071914 |
atttacctgggttaaccggttcaatcactgtgatttccaacatgacattgttaactcaggtatggcttcatgtgaataaattcaccggtccaattccaga |
35072013 |
T |
|
| Q |
201 |
tttatcgcaatgcaatagtataaaagatctgcaacttagggataatcagttaactggtgtggttcctgattctctggtgagcatgtctagcttgcagaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35072014 |
tttatcgcaatgcaatagtataaaagatctgcaacttagggataatcagttaactggtgtggttcctgattctctggtgagcatgtctggcttgcagaat |
35072113 |
T |
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| Q |
301 |
gttactctaagaaataatcagcttcagggacctgttccggtgttcggtaaagatgtgaaatataattctgatgatatcagtcataataacttttgtaata |
400 |
Q |
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| T |
35072114 |
gttactctaagaaataatcagcttcagggacctgttccggtgttcggtaaagatgtgaaatataattctgatgatatcagtcataataacttttgtaata |
35072213 |
T |
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| Q |
401 |
ataatgcatctgtaccttgtgatgctagggttatggatttgcttcatatt |
450 |
Q |
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| T |
35072214 |
ataatgcatctgtaccttgtgatgctagggttatggatttgcttcatatt |
35072263 |
T |
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Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 187 - 356
Target Start/End: Original strand, 33919983 - 33920152
Alignment:
| Q |
187 |
ggtccaattccagatttatcgcaatgcaatagtataaaagatctgcaacttagggataatcagttaactggtgtggttcctgattctctggtgagcatgt |
286 |
Q |
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||||| |||| |||||||||||||||||||| |||| | ||||||||||||||||||| ||||||||| || || ||| |||| | || | ||| |||| |
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| T |
33919983 |
ggtcctattctagatttatcgcaatgcaataatatatatgatctgcaacttagggatagtcagttaaccggcgttgttactgagtttccgatgaatatgt |
33920082 |
T |
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| Q |
287 |
ctagcttgcagaatgttactctaagaaataatcagcttcagggacctgttccggtgttcggtaaagatgt |
356 |
Q |
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|||| ||| |||||||||||| ||| ||||| ||||||||||||||||| ||| ||| ||||||||| |
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| T |
33920083 |
ctaggttgaagaatgttactccgagacataatgtgcttcagggacctgttctggttttcaataaagatgt |
33920152 |
T |
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