View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19721_low_8 (Length: 455)
Name: NF19721_low_8
Description: NF19721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19721_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 398; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 16 - 445
Target Start/End: Original strand, 1194218 - 1194646
Alignment:
| Q |
16 |
aagtgttcaatagaaaatcaaaattgttcatgaactttgtgataattattcattgaattaattatatcatgagcagttggcttagaatctaacagcttaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1194218 |
aagtgttcaatagaaaatcaaaattgttcatgaactttgtgataattattcattgaattaattgtatcatgagcagttggcttagaatctaacagcttaa |
1194317 |
T |
|
| Q |
116 |
atgaaagtttgacaagatacaagttaatgacaagactgaagtaacagaactatataagaattcctggaacagaaaagctaaatagaatggaataccacaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1194318 |
atgaaagtttgacaagatacaagttaatgacaagactgaagtaacagaacca-ataagaattcctggaatagaaaagctaaatagaatggaataccacaa |
1194416 |
T |
|
| Q |
216 |
actattgatattacaaactaaggtccaagatttctagctattgttctaaacacaagctcattcgaaagatcatcaaactaaccaactagtttgtttttac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1194417 |
actattgatattacaaactaaggtccaagatttctagctattgttctaaacacaagctcattcgaaagatcatcaaactaaccaactagtttgtttctac |
1194516 |
T |
|
| Q |
316 |
tttgatgtcaaagtatatgcgtgtagacaaatacattcaaaaagttttccaatgcactggtcagggtaaattttgatgatccctcttttgctaaaccagg |
415 |
Q |
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| T |
1194517 |
tttgatgtcaaagtatatgcgtgtagacaaatacattcaaaaagttttccaatgcactagtcagggtaaattttgatgatccctcttttgctaaaccagg |
1194616 |
T |
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| Q |
416 |
atcaagtaacacaaattacccaagttcttc |
445 |
Q |
| |
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| T |
1194617 |
atcaaataacacaaattacccaagttcttc |
1194646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 285 - 445
Target Start/End: Original strand, 1183732 - 1183890
Alignment:
| Q |
285 |
tcatcaaactaaccaactagtttgtttttactttgatgtcaaagtatatgcgtgta--gacaaatacattcaaaaagttttccaatgcactggtcagggt |
382 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| || | ||| | || ||||||||||||||||||||||| | |||||| | |
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| T |
1183732 |
tcatcaaactaaccagctagtttgtttttactttgatgtcaaagtagattcttgttttggca----cattcaaaaagttttccaatgcattagtcaggtt |
1183827 |
T |
|
| Q |
383 |
aaattttgatgatccctcttttgctaaaccaggatcaagtaacacaaattacccaagttcttc |
445 |
Q |
| |
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||||||| ||||||||||||||||||||||| |||||||||||| | |||||||||||||||| |
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| T |
1183828 |
aaattttcatgatccctcttttgctaaaccaagatcaagtaacatagattacccaagttcttc |
1183890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 199 - 270
Target Start/End: Original strand, 1188836 - 1188907
Alignment:
| Q |
199 |
agaatggaataccacaaactattgatattacaaactaaggtccaagatttctagctattgttctaaacacaa |
270 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| |||||||| |
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| T |
1188836 |
agaatggaaaaccacaaaccattgatattacaaaccaaggttcaagatttctagctattgttcaaaacacaa |
1188907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 1183567 - 1183629
Alignment:
| Q |
98 |
tagaatctaacagcttaaatgaaagtttgacaagatacaagttaatgacaagactgaagtaac |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||| |
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|
| T |
1183567 |
tagaatctaacagcttaaatgaaagtttgacacgatacaacttaacgacaagactgaagtaac |
1183629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 348 - 408
Target Start/End: Original strand, 898147 - 898207
Alignment:
| Q |
348 |
acattcaaaaagttttccaatgcactggtcagggtaaattttgatgatccctcttttgcta |
408 |
Q |
| |
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||||||||||||| || ||||||||| || |||||||||||||||||||||||||| |||| |
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| T |
898147 |
acattcaaaaagtcttgcaatgcactagtgagggtaaattttgatgatccctctttcgcta |
898207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 1183690 - 1183733
Alignment:
| Q |
197 |
atagaatggaataccacaaactattgatattacaaactaaggtc |
240 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||| |
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|
| T |
1183690 |
atagaaaggaaaaccacaaactattgatattacaaactaaggtc |
1183733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 1188654 - 1188687
Alignment:
| Q |
25 |
atagaaaatcaaaattgttcatgaactttgtgat |
58 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
1188654 |
atagaaaatcaaaattgttcatgaactttgtgat |
1188687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 327
Target Start/End: Complemental strand, 5510434 - 5510378
Alignment:
| Q |
271 |
gctcattcgaaagatcatcaaactaaccaactagtttgtttttactttgatgtcaaa |
327 |
Q |
| |
|
||||||| |||||||||| ||| ||||||||||||||||||| ||||||||||||| |
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|
| T |
5510434 |
gctcatttgaaagatcattaaatcaaccaactagtttgtttttgctttgatgtcaaa |
5510378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 207 - 271
Target Start/End: Original strand, 5457081 - 5457146
Alignment:
| Q |
207 |
ataccacaaactattgatattacaaactaaggtccaagat-ttctagctattgttctaaacacaag |
271 |
Q |
| |
|
|||||| ||| || |||||| ||| ||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
5457081 |
ataccaaaaagtactgatatgacatactaaggtccaagatcttctagctattgttcaaaacacaag |
5457146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 5510535 - 5510462
Alignment:
| Q |
199 |
agaatggaataccacaaactattgatattacaaactaaggtccaagatttctagctattgttctaaacacaagc |
272 |
Q |
| |
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|||| |||| ||||||| || ||||||||||||| |||||||| ||||||||| |||| ||| |||||||||| |
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| T |
5510535 |
agaaaggaaaaccacaatttagtgatattacaaaccaaggtccaggatttctagatattattcaaaacacaagc |
5510462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 10204119 - 10204159
Alignment:
| Q |
64 |
ttcattgaattaattatatcatgagcagttggcttagaatc |
104 |
Q |
| |
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||||||||||||||| |||||| |||| ||||||||||||| |
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|
| T |
10204119 |
ttcattgaattaattgtatcataagcacttggcttagaatc |
10204159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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