View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19721_low_9 (Length: 454)
Name: NF19721_low_9
Description: NF19721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19721_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 183 - 391
Target Start/End: Original strand, 20681664 - 20681874
Alignment:
| Q |
183 |
ttgagatactctttctttgcgaaattattaacaacatcacttatgttatttctcatgcagttttgcaagggggagt--attagtccatgtctctgaaatc |
280 |
Q |
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| T |
20681664 |
ttgagatactctttctttccgaaattattaacaacctcacttatgttatttctcatgtagttttgcaagggggagtgtattagtccatgtctctgaaatc |
20681763 |
T |
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| Q |
281 |
tttcaaacaagagattttcatcaataatgtctacaatcatcttggtcatcgtttcatgagcattgtatgtttcatctttatcaacttgtttttactttgg |
380 |
Q |
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| T |
20681764 |
tttcaaacaagaggttttcatcaataatgtctacaatcatcttggtcatcgtttcgtcagcattgtatgtttcatctttatcaacttgtttttactttgg |
20681863 |
T |
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| Q |
381 |
tttatgatact |
391 |
Q |
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||||| ||||| |
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| T |
20681864 |
tttattatact |
20681874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 20681437 - 20681597
Alignment:
| Q |
18 |
aattatctatcagtgaatcaattctgaat-agcatagttctattgggaacatataagaaaaattattttgttttattagcatcatcattattcaatttcc |
116 |
Q |
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| T |
20681437 |
aattatctatcagtgaattaattctgaatcagcatagttctattgggaacgtataagaaaaattattttgttttattagcatcatcattattcaatttcc |
20681536 |
T |
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| Q |
117 |
ttgctatgttttattttgctttatttcaatgcctaataattagagatacattgatcctaat |
177 |
Q |
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| T |
20681537 |
ttgctatgttttattttgctttatttcaatgcctaataatttgagatacattgatcctaat |
20681597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 252 - 352
Target Start/End: Original strand, 20683258 - 20683361
Alignment:
| Q |
252 |
ggggagtattagtccatgtctctgaaatctttcaaacaagag---attttcatcaataatgtctacaatcatcttggtcatcgtttcatgagcattgtat |
348 |
Q |
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| T |
20683258 |
ggggagtattagtccatgtcttcgaaatcattcaaacaagaggaagtttccaacaataatgtctacaatcatcttgaccattgtttcatctgcaatgtat |
20683357 |
T |
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| Q |
349 |
gttt |
352 |
Q |
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|||| |
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| T |
20683358 |
gttt |
20683361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 51174224 - 51174270
Alignment:
| Q |
75 |
aaaattattttgttttattagcatcatcattattcaatttccttgct |
121 |
Q |
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| T |
51174224 |
aaaattattttgttttattagcatcaacattattcaatttccttgct |
51174270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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