View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19722_high_14 (Length: 405)
Name: NF19722_high_14
Description: NF19722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19722_high_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 8 - 393
Target Start/End: Complemental strand, 36834454 - 36834069
Alignment:
| Q |
8 |
caaaggggaggttggagacaagtcttagaagcgtatgactaacatctgagtagaagcaagacccgtagcatataaaatacaattttaccaaaaagagaag |
107 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36834454 |
caaatgggaggttggagacaagccttagaagcgtatgactgacatctgagaagaagcaagacacgtagcatataaaatacaattttaccaaaaagagaag |
36834355 |
T |
|
| Q |
108 |
catttctagcttagagatggaagttgaagattgtgtcgtacaacaaattgaaggtttaaaaatcattgattcatagtacaaatcggttgagaaatagaag |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36834354 |
catttctagcttagagatggaagttgaagattgtgtcgtaccacaaattgaaggtttaaaaatcattgatccatagtacaaatcggttgagaaatagaag |
36834255 |
T |
|
| Q |
208 |
atgtaaatgatcaaactcaagcgtggtggttcaaacgagggagggatctctagtgttttatgcgatacaaatttatttcacatgtataaaattggccata |
307 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
36834254 |
atgtaaatgatcaaactcaatcgtggtggttgaaacgagggagggatctttagtgtgttatgcgatacaaatttatttcacatgtataaaattggcaata |
36834155 |
T |
|
| Q |
308 |
atggtgtatgaacaaagtgttgaacggtaaaaaaccaacacaagaataaaacaaataacaaatattacacattttagtccatcatg |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
36834154 |
atggtgtatgaacaaagtgttgaacggtaaaaaaccaacacaagaataaaataaatgacaaatattacacattttagtccatcatg |
36834069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 37124115 - 37124164
Alignment:
| Q |
19 |
ttggagacaagtcttagaagcgtatgactaacatctgagtagaagcaaga |
68 |
Q |
| |
|
|||||||||||||||||||||||| || | |||||||| |||||||||| |
|
|
| T |
37124115 |
ttggagacaagtcttagaagcgtaagattttcatctgagcagaagcaaga |
37124164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 17668059 - 17668009
Alignment:
| Q |
19 |
ttggagacaagtcttagaagcgtatgactaacatctgagtagaagcaagac |
69 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17668059 |
ttggagacaagtcttagaagcgtatgacttttgtctgagtagaagcaagac |
17668009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 17666770 - 17666719
Alignment:
| Q |
18 |
gttggagacaagtcttagaagcgtatgactaacatctgagtagaagcaagac |
69 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| | |||||||||||||||||| |
|
|
| T |
17666770 |
gttggatacaagtcttagaagcatatgactttcgtctgagtagaagcaagac |
17666719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 2680786 - 2680736
Alignment:
| Q |
19 |
ttggagacaagtcttagaagcgtatgactaacatctgagtagaagcaagac |
69 |
Q |
| |
|
||||||||||| ||||||||||||||| | |||||| ||||||||||||| |
|
|
| T |
2680786 |
ttggagacaagccttagaagcgtatgattttcatctgcgtagaagcaagac |
2680736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 32067000 - 32066958
Alignment:
| Q |
23 |
agacaagtcttagaagcgtatgactaacatctgagtagaagca |
65 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
32067000 |
agacaagtcttagaagcgtatgactttcatatgagtagaagca |
32066958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University