View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19722_high_20 (Length: 325)
Name: NF19722_high_20
Description: NF19722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19722_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 110 - 307
Target Start/End: Complemental strand, 3853414 - 3853217
Alignment:
| Q |
110 |
atgaaacttgctaacctactcaacacaattttctccaaagaaaaattgaacatgttatcgtatgagaaaattttgttggttttaattcaataaatttgac |
209 |
Q |
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| T |
3853414 |
atgaaacttgctaacctactcaacacaattttctccaaagaaaaattgaacatgttatcgtatgagaaaattttgttggttttaattcaataaatttgac |
3853315 |
T |
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| Q |
210 |
aattgattagaatataggataaattgaacatgttatattgttgttatgtttacactaccaacgtcactactcacctgtcatctagattacaaaccagt |
307 |
Q |
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| T |
3853314 |
aattgattagaatataggataaattgaacatgttatattgttgttatgtttacactaccaacgtcactactcacctgtcatctagattacaaaccagt |
3853217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 3853520 - 3853456
Alignment:
| Q |
1 |
tttaaacttgttctctaagcattgtttttaacaggttctctatgcttgacgtgagaaatttaata |
65 |
Q |
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| T |
3853520 |
tttaaacttgttctctaagcattgtttttaacaggttctctatgcttgacgtgagaaatttaata |
3853456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 159
Target Start/End: Complemental strand, 20782242 - 20782205
Alignment:
| Q |
122 |
aacctactcaacacaattttctccaaagaaaaattgaa |
159 |
Q |
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| T |
20782242 |
aacctactcaacacaattttccccaaaggaaaattgaa |
20782205 |
T |
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