View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19722_high_3 (Length: 531)
Name: NF19722_high_3
Description: NF19722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19722_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 27845234 - 27845465
Alignment:
| Q |
1 |
gttaaatgcttatgagagctatatagctagggtagggaataagttagtacctgttatatttgtacataagtctaccaagagggacaaaagagacagttac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27845234 |
gttaaatgcttatgagagctatatagctagggtcgggaataagttagtacctgttatatttgtacatatgtctaccaagagggacaaaagagacagttac |
27845333 |
T |
|
| Q |
101 |
ttatacacacttttgttttgcagacaaaataagcatcaaaacttttgcttg-nnnnnnnnggaatcaagggatatagctttattttaacctttgttaact |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27845334 |
ttatacacacttttgttttgcagacaaaataagcatcaaaacttttgcttgtttttttttggaatcaagggatatagctttattttaacctttgttaact |
27845433 |
T |
|
| Q |
200 |
agccatttgcaaatacttactttgactgtaatt |
232 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
27845434 |
agccatttgcaaatacttac-ttgactgtaatt |
27845465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 247 - 395
Target Start/End: Original strand, 27845558 - 27845721
Alignment:
| Q |
247 |
ttttataaggatgaattatactagcattgagtaacaaagtatatatcatatatggctggaagaaccatcctaacaacatttttat--------------- |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27845558 |
ttttataaggatgaattatactagcattgagtaacaaagtatatatcatatatggctggaagatccatcctaacaacatttttattacaaacgacggata |
27845657 |
T |
|
| Q |
332 |
-tagatcagacttaaaacatatcaattttgaaattgaccttatgctaacaacattttcattacac |
395 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27845658 |
atagatcagactt-aaacatatatattttgaaattgaccttatgctaacaacattttcattacac |
27845721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 409 - 489
Target Start/End: Original strand, 27845706 - 27845786
Alignment:
| Q |
409 |
aacattttcattacacatgctatttatgtgtagcctaattcagtgagattcatttctattttaaccgattaaagaccatgt |
489 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27845706 |
aacattttcattacacatgctatttatgtgtagcctaattcagtgagattcatttctattttaaccgattaaagaccatgt |
27845786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 84 - 232
Target Start/End: Original strand, 20140192 - 20140343
Alignment:
| Q |
84 |
acaaaagagacagttacttatacacacttttgttttgcagacaaaataagcatcaaaacttttgcttgnnnnnnnngg---aatcaagggatatagcttt |
180 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
20140192 |
acaaaagagacagttacttacacacagttttgttttgcagacaaaataagcatcaaaacttttgcttgttgttttttttttaatcaagggatatagcttt |
20140291 |
T |
|
| Q |
181 |
attttaacctttgttaactagccatttgcaaatacttactttgactgtaatt |
232 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20140292 |
attttaaccattgttaactagccatttgcaaatacttactttgactgtaatt |
20140343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 84 - 232
Target Start/End: Complemental strand, 22192677 - 22192526
Alignment:
| Q |
84 |
acaaaagagacagttacttatacacacttttgttttgcagacaaaataagcatcaaaacttttgcttgnnnnnnnngg---aatcaagggatatagcttt |
180 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22192677 |
acaaaagagacagttacttacacacagttttgttttgcagacaaaataagcatcaaaacttttgcttgttgttttttttttaatcaagggatatagcttt |
22192578 |
T |
|
| Q |
181 |
attttaacctttgttaactagccatttgcaaatacttactttgactgtaatt |
232 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22192577 |
attttaaccattgttaactagccatttgcaaatacttactttgactgtaatt |
22192526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University