View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19722_high_5 (Length: 484)
Name: NF19722_high_5
Description: NF19722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19722_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 3911826 - 3911362
Alignment:
| Q |
1 |
gcaaagaacatcatcctttatttattgctgacacccttaaaacatcatgttttcatttttaaaatatgtttttgattgctatggcaccctg-aaaacaaa |
99 |
Q |
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| T |
3911826 |
gcaaagaacatcatcctttatttattgctgacacccttaaaacatcatgttttcatttttaaaatatgtttttgattgctatggcaccctgaaaaacaaa |
3911727 |
T |
|
| Q |
100 |
ttaaatttttgatcatggtatgaactagttggcccttagttggaactgaaccttatgatttcagaatcaaacctatattgatttaaacattattacaata |
199 |
Q |
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| T |
3911726 |
ttaaatttttgatcatggtatgaactagttggcccttagttggaactgaaccttatgatttcagaatcaaacttatattga-ttaaacattattacaata |
3911628 |
T |
|
| Q |
200 |
caatttcacacctaactaccatgccacatgcatataatacgtgtcnnnnnnnnnnnnnnnnncaaatgtcaatttttcattataaattgatcagttgcta |
299 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3911627 |
caatttcacacctaactaccataccacatgcatataatacgtgtctttttttctttctttttcaaatgtcaatttttcattataaattgatcagttgcta |
3911528 |
T |
|
| Q |
300 |
aatattatttcacacatcaaaatcggctaggcatttttccttttgagcgtgctagagaaaaatggaagttattaatgtaaatcaatggaacaatgaagct |
399 |
Q |
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| T |
3911527 |
aatattatttcacacatcaaaatcggctaggcatttttccttttgagtgtgctagagaaaaatggaagttattaatgtaaatcaatggaacaatgaagct |
3911428 |
T |
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| Q |
400 |
gatactgatgaagttgaagaaatcagcttgcaacgaaagagtgttgtccagcatagtagtagcagc |
465 |
Q |
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| T |
3911427 |
gataccgatgaagttgaagaaatcagcttgcaacgaaagagtgttgtccagcatagtagtagcagc |
3911362 |
T |
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