View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19722_high_6 (Length: 479)
Name: NF19722_high_6
Description: NF19722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19722_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 29604768 - 29604681
Alignment:
| Q |
20 |
atgagattattgcacaattgtatatttatatccttttacaatatttcagattcgtaatatagaaaatagcacagtaccattctttata |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||| || |||||||||||||||||| |
|
|
| T |
29604768 |
atgagattattgcacaattgtatatttatatccttgtacaatatttcagatttgcaatatagaaaacagtacagtaccattctttata |
29604681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 20076232 - 20076297
Alignment:
| Q |
20 |
atgagattattgcacaattgtatatttatatccttttacaatatttcagattcgtaatatagaaaa |
85 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||| |||||||||| | |||||||||| |
|
|
| T |
20076232 |
atgagattattgcacaattgtatatttatatgcttgtacaacatttcagatttgatatatagaaaa |
20076297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 5399137 - 5399218
Alignment:
| Q |
248 |
cgtgcctggaaacgacaagtcacctctcttctctcgggtatccaagtcataggtcacattgatggcaccacttcttctcaaa |
329 |
Q |
| |
|
|||||||||||||| || | |||||||||||||| |||||||||||||| || || |||||||| ||||| ||||||||| |
|
|
| T |
5399137 |
cgtgcctggaaacgtcaggctacctctcttctctctggtatccaagtcattggccatattgatggaaccacaccttctcaaa |
5399218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 3540134 - 3540215
Alignment:
| Q |
248 |
cgtgcctggaaacgacaagtcacctctcttctctcgggtatccaagtcataggtcacattgatggcaccacttcttctcaaa |
329 |
Q |
| |
|
|||||||||||||| || | |||||||||||||| |||||||||| ||| || || |||||||| ||||| ||||||||| |
|
|
| T |
3540134 |
cgtgcctggaaacgtcaggctacctctcttctctccggtatccaagacattggccatattgatggaaccacaccttctcaaa |
3540215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University