View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19722_high_7 (Length: 477)
Name: NF19722_high_7
Description: NF19722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19722_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 32833579 - 32833123
Alignment:
| Q |
1 |
ttgacactatactaactcacccttaatcaagcttgttaatctaattatcttcaatgcttaattgcatcttactttatgctgataaacttataaatgagtg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32833579 |
ttgacactatactaactcacccttaatcaagcttgttaatctaattatcttaaatgcttaattgcatcttactttatgctgataaacttataaatgagtg |
32833480 |
T |
|
| Q |
101 |
ggggaaaatattaattcagcataatatatatactttactttatgtttgtaatgttcacttgatgtaagtttccatttgatatattggattatgttatggg |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32833479 |
gggtaaaatattaattcagcataatatatatactttactttatgtttgtaatgttcgcttgatgtaagtttccatttgatatattggattatgttatggg |
32833380 |
T |
|
| Q |
201 |
atatgaacttgtgcttgaaattttagtgacggttattcttaaatttatgcatatctgtcaggataacaattttaaacattattaagtagtggcttttatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32833379 |
atatgaacttgtgcttgaaattttagtgacggttattcttaaatttatgcatatctgtcaggataacaattttaaacattattaagtagtggcttttatt |
32833280 |
T |
|
| Q |
301 |
taaagataattaaaaagtggcttttatgatgtatgatgatgactgatattgaatagtggcctttatccttatgtttgatttgtaagcttgcttcacaaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32833279 |
taaagataattaaaaagtggcttttatgatgtatgatgatgactgatattgaatagtggcctttatccttatgtttgatttgtaagcttgcttcacaaat |
32833180 |
T |
|
| Q |
401 |
aagtgtaaccgaagtctaaccgttttagtg-tttgatatatgataactaactgacacttcat |
461 |
Q |
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|| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
32833179 |
aactgtaaccgaagtctaaccgttttagtgttttgat-----ataactaactgacacttcat |
32833123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 32840001 - 32839879
Alignment:
| Q |
1 |
ttgacactatactaactcacccttaatcaagcttgttaatctaattatcttcaatgcttaattgcatcttactttatgctgataaacttataaatgagtg |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
32840001 |
ttgacactatactaactcacacttaatcaagcttgttaatctaattctcttcaatgtttaattgcatcttactttatgctggtaaacttataaatgagtg |
32839902 |
T |
|
| Q |
101 |
ggggaaaatattaattcagcata |
123 |
Q |
| |
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||| ||||||||||||||||||| |
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| T |
32839901 |
gggaaaaatattaattcagcata |
32839879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 32839845 - 32839780
Alignment:
| Q |
130 |
atactttactttatgtttgtaatgttcacttgatgtaagtttccatttgatatattggattatgtt |
195 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||| || |||||||||||||| |
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|
| T |
32839845 |
atactttacattatgtttgtaatgttcacttgatttaagtttccatttcatttattggattatgtt |
32839780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 95
Target Start/End: Complemental strand, 29605080 - 29605042
Alignment:
| Q |
57 |
cttaattgcatcttactttatgctgataaacttataaat |
95 |
Q |
| |
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||||||||||||||||||| ||||||||||| ||||||| |
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|
| T |
29605080 |
cttaattgcatcttactttgtgctgataaacatataaat |
29605042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 431 - 461
Target Start/End: Complemental strand, 32839591 - 32839561
Alignment:
| Q |
431 |
tttgatatatgataactaactgacacttcat |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
32839591 |
tttgatatatgataactaactgacacttcat |
32839561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 415 - 461
Target Start/End: Original strand, 16834688 - 16834735
Alignment:
| Q |
415 |
tctaaccgttttagtgttt-gatatatgataactaactgacacttcat |
461 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
16834688 |
tctaaccgttttagtgttttgatatatgataactaactgacacttcat |
16834735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 96
Target Start/End: Original strand, 19961148 - 19961187
Alignment:
| Q |
57 |
cttaattgcatcttactttatgctgataaacttataaatg |
96 |
Q |
| |
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||||| ||||||||||||| |||||||||||||||||||| |
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| T |
19961148 |
cttaactgcatcttactttgtgctgataaacttataaatg |
19961187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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