View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19722_low_1 (Length: 716)
Name: NF19722_low_1
Description: NF19722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19722_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 402 - 698
Target Start/End: Original strand, 7976882 - 7977184
Alignment:
| Q |
402 |
atatctacaaatcaa---gggaaaccgtcatgcctggattagtacagtaaatc---gagtcgtacatcgtgacgaaatccctaaatcatttaccccaact |
495 |
Q |
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| T |
7976882 |
atatctacaaatcaacaagggaaaccgtcatgcctggattagtacagtaaatcatcgagtcctacatcgtgacaaaatccctaaatcatttaccccaact |
7976981 |
T |
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| Q |
496 |
ttgtatttacaaaatgtatttatttacatttgcataagatacataatcgagttgaaactattaggtgtaaatacaaatagaaaataaagacatggagttt |
595 |
Q |
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| T |
7976982 |
ttgtatttacaaaatgtatttatttacatttgcataagatacataattgagttgaaacaattaggtgtaaatgcaaatagaaaataaagacatggagttt |
7977081 |
T |
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| Q |
596 |
ttgaaaaatggtaccctttatttgattcattatgtcaatattgtttcataaaaagtatatttgtcaagtatgacacaagaatcttatccaagtaatataa |
695 |
Q |
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| T |
7977082 |
ttgaaacatggtaccctttatttgattcattatgtcaatattgtttcataaaaagtatatttgtcaagtatgacacaagaatcttatccaagtaatataa |
7977181 |
T |
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| Q |
696 |
ctc |
698 |
Q |
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| T |
7977182 |
ctc |
7977184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 252 - 338
Target Start/End: Original strand, 7976773 - 7976859
Alignment:
| Q |
252 |
aaaagaggaaacatctgtgaatctagaaatatgaagatcatggatgtactgatctggaaaaataccatgtcagttctaaactaaacc |
338 |
Q |
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| T |
7976773 |
aaaagaagaaacattcgtgaatctggaaatataaagatcatagatgtactaatctggaaaaatacaatgtcagttctaaactaaacc |
7976859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 443 - 619
Target Start/End: Original strand, 658931 - 659104
Alignment:
| Q |
443 |
cagtaaatcgagtcgtacatcgtgacgaaatccctaaatcatttaccccaactttgtatttacaaaatgtatttatttacatttgcataagatacataat |
542 |
Q |
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| T |
658931 |
cagtaaatcaatttgtacatcgtgactaaatctataaattatgaaacccaacattgtatttacaaattgtatttctatgcata---ataagatacataat |
659027 |
T |
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| Q |
543 |
cgagttgaaactattaggtgtaaatacaaatagaaaataaagacatggagtttttgaaaaatggtaccctttatttg |
619 |
Q |
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| T |
659028 |
caagttcaaactattggctctaaatgaaaataaaaaatagagacatggagtttttgcaacatgacaccctttatttg |
659104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 51992745 - 51992798
Alignment:
| Q |
239 |
tctaaaataaaacaaaagaggaaacatctgtgaatctagaaatatgaagatcat |
292 |
Q |
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| T |
51992745 |
tctaaaataaaacaaaaacgaaagcatccgtgaatctggaaatatgaagatcat |
51992798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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