View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19722_low_11 (Length: 462)
Name: NF19722_low_11
Description: NF19722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19722_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 7e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 246 - 415
Target Start/End: Original strand, 10638734 - 10638903
Alignment:
| Q |
246 |
cactatcaccatttcgttaatgcttgctcattcagtagacattacaagattcctccaatagaatttcctttggtaaatgaacataagaagaatcttatct |
345 |
Q |
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| T |
10638734 |
cactatcaccatttcgttaatgcttgctcattcagtagacattacaagattcctccaatagaatttcctttggtaaatgaacataagaagaatcttatct |
10638833 |
T |
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| Q |
346 |
tgtggcttaggaaaacatgaagtatcattatcaaaatattggattaaacacggtattattagcaactagt |
415 |
Q |
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| T |
10638834 |
tgtggcttagcaaaacatgagctatcattatcaaaatattggattaaacacggtattattagcaactagt |
10638903 |
T |
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Target: chr1; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 10638505 - 10638652
Alignment:
| Q |
17 |
tttattaagaggtctcacacataaaattgaactcacgctcttacataatatgaactaactcgatatcagttaaactaacatttattgtttctcaatcaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||| || ||||||||||||||||||||||||| |
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| T |
10638505 |
tttattaagaggtctcacacataaaattgaactcacgctcttacggaatatgaaccgactcaatatcagttgaattaacatttattgtttctcaatcaaa |
10638604 |
T |
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| Q |
117 |
tcaactaaataagcgacatcagcagcaataccaaattggtctcaaaag |
164 |
Q |
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| T |
10638605 |
tcaactaaataagcgacatcagcagcaataccaaattggtctcaaaag |
10638652 |
T |
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